Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 NCF1C-201ENST00000438382 1427 ntBASIC16.32■□□□□ 0.2
SLC28A1O00337 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.32■□□□□ 0.2
SLC28A1O00337 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SLC28A1O00337 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
SLC28A1O00337 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SLC28A1O00337 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.32■□□□□ 0.2
SLC28A1O00337 AC006538.1-201ENST00000567905 1585 ntBASIC16.32■□□□□ 0.2
SLC28A1O00337 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.32■□□□□ 0.2
SLC28A1O00337 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SLC28A1O00337 AC138894.3-201ENST00000603787 634 ntBASIC16.32■□□□□ 0.2
SLC28A1O00337 AP001269.4-201ENST00000609611 512 ntBASIC16.32■□□□□ 0.2
SLC28A1O00337 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SLC28A1O00337 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SLC28A1O00337 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.32■□□□□ 0.2
SLC28A1O00337 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.32■□□□□ 0.2
SLC28A1O00337 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.32■□□□□ 0.2
SLC28A1O00337 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.32■□□□□ 0.2
SLC28A1O00337 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SLC28A1O00337 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SLC28A1O00337 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SLC28A1O00337 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
SLC28A1O00337 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SLC28A1O00337 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SLC28A1O00337 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
SLC28A1O00337 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.31■□□□□ 0.2
SLC28A1O00337 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.31■□□□□ 0.2
SLC28A1O00337 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
SLC28A1O00337 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.31■□□□□ 0.2
SLC28A1O00337 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 BX005266.1-201ENST00000473402 457 ntBASIC16.31■□□□□ 0.2
SLC28A1O00337 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.31■□□□□ 0.2
SLC28A1O00337 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SLC28A1O00337 AC013467.2-201ENST00000605472 835 ntBASIC16.31■□□□□ 0.2
SLC28A1O00337 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.31■□□□□ 0.2
SLC28A1O00337 AL022326.1-202ENST00000641533 845 ntBASIC16.31■□□□□ 0.2
SLC28A1O00337 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
SLC28A1O00337 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.31■□□□□ 0.2
SLC28A1O00337 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.31■□□□□ 0.2
SLC28A1O00337 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.31■□□□□ 0.2
SLC28A1O00337 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
SLC28A1O00337 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SLC28A1O00337 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.31■□□□□ 0.2
SLC28A1O00337 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.31■□□□□ 0.2
SLC28A1O00337 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.3■□□□□ 0.2
SLC28A1O00337 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SLC28A1O00337 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SLC28A1O00337 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
SLC28A1O00337 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.3■□□□□ 0.2
SLC28A1O00337 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.3■□□□□ 0.2
SLC28A1O00337 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.3■□□□□ 0.2
SLC28A1O00337 AC106795.1-205ENST00000512851 1056 ntBASIC16.3■□□□□ 0.2
SLC28A1O00337 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.3■□□□□ 0.2
SLC28A1O00337 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.3■□□□□ 0.2
SLC28A1O00337 AL139011.1-202ENST00000642063 584 ntBASIC16.3■□□□□ 0.2
SLC28A1O00337 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.3■□□□□ 0.2
SLC28A1O00337 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
SLC28A1O00337 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SLC28A1O00337 AC006277.1-201ENST00000624348 1610 ntBASIC16.3■□□□□ 0.2
SLC28A1O00337 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SLC28A1O00337 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.29■□□□□ 0.2
SLC28A1O00337 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SLC28A1O00337 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SLC28A1O00337 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.29■□□□□ 0.2
SLC28A1O00337 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SLC28A1O00337 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.29■□□□□ 0.2
SLC28A1O00337 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SLC28A1O00337 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
SLC28A1O00337 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms