Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
COL12A1Q99715 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
COL12A1Q99715 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
COL12A1Q99715 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC14.6□□□□□ -0.07
COL12A1Q99715 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
COL12A1Q99715 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC14.6□□□□□ -0.07
COL12A1Q99715 AP001258.2-201ENST00000529891 490 ntBASIC14.6□□□□□ -0.07
COL12A1Q99715 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.6□□□□□ -0.07
COL12A1Q99715 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.6□□□□□ -0.07
COL12A1Q99715 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.6□□□□□ -0.07
COL12A1Q99715 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.6□□□□□ -0.07
COL12A1Q99715 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC14.6□□□□□ -0.07
COL12A1Q99715 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC14.6□□□□□ -0.07
COL12A1Q99715 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
COL12A1Q99715 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 SLC22A20-204ENST00000530038 1673 ntBASIC14.6□□□□□ -0.07
COL12A1Q99715 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 AC044860.1-202ENST00000559481 777 ntBASIC14.6□□□□□ -0.07
COL12A1Q99715 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.6□□□□□ -0.07
COL12A1Q99715 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.6□□□□□ -0.07
COL12A1Q99715 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.6□□□□□ -0.07
COL12A1Q99715 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL12A1Q99715 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC14.6□□□□□ -0.07
COL12A1Q99715 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
COL12A1Q99715 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC14.6□□□□□ -0.07
COL12A1Q99715 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC14.6□□□□□ -0.07
COL12A1Q99715 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 AC073389.1-201ENST00000595595 795 ntBASIC14.6□□□□□ -0.07
COL12A1Q99715 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL12A1Q99715 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC14.59□□□□□ -0.07
COL12A1Q99715 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC14.59□□□□□ -0.07
COL12A1Q99715 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.59□□□□□ -0.07
COL12A1Q99715 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
COL12A1Q99715 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.59□□□□□ -0.07
COL12A1Q99715 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.59□□□□□ -0.07
COL12A1Q99715 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
COL12A1Q99715 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC14.59□□□□□ -0.07
COL12A1Q99715 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.59□□□□□ -0.07
COL12A1Q99715 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 KRT18P34-201ENST00000488218 1270 ntBASIC14.59□□□□□ -0.07
COL12A1Q99715 NEU3-202ENST00000526068 431 ntTSL 2 BASIC14.59□□□□□ -0.07
COL12A1Q99715 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 AC012317.2-201ENST00000623305 2251 ntBASIC14.59□□□□□ -0.07
COL12A1Q99715 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
COL12A1Q99715 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
COL12A1Q99715 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.59□□□□□ -0.07
COL12A1Q99715 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC14.59□□□□□ -0.07
COL12A1Q99715 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.59□□□□□ -0.07
COL12A1Q99715 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC14.59□□□□□ -0.07
COL12A1Q99715 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
COL12A1Q99715 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
COL12A1Q99715 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL12A1Q99715 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.59□□□□□ -0.07
COL12A1Q99715 HARS-204ENST00000438307 1789 ntTSL 2 BASIC14.59□□□□□ -0.07
COL12A1Q99715 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
COL12A1Q99715 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC14.58□□□□□ -0.07
COL12A1Q99715 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL12A1Q99715 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
COL12A1Q99715 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL12A1Q99715 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC14.58□□□□□ -0.07
COL12A1Q99715 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL12A1Q99715 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.58□□□□□ -0.07
COL12A1Q99715 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.07
COL12A1Q99715 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.58□□□□□ -0.07
COL12A1Q99715 AC105021.1-202ENST00000570572 669 ntBASIC14.58□□□□□ -0.07
COL12A1Q99715 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC14.58□□□□□ -0.07
COL12A1Q99715 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.58□□□□□ -0.07
COL12A1Q99715 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms