Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 KRT8P49-201ENST00000604166 1432 ntBASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 AL021920.2-201ENST00000624828 1351 ntBASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 TP73-AS1-207ENST00000624167 988 ntBASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 AC107918.4-202ENST00000641623 219 ntBASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.82■□□□□ 0.28
ZNF549Q6P9A3 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 RPS2P1-201ENST00000434010 821 ntBASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 LINC00895-201ENST00000629028 1637 ntBASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ZNF549Q6P9A3 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms