Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTCHD3Q3KNS1 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
PTCHD3Q3KNS1 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.58■□□□□ 0.25
PTCHD3Q3KNS1 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
PTCHD3Q3KNS1 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 Z83851.2-201ENST00000609564 659 ntBASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 AC004706.3-202ENST00000621574 984 ntBASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 PCDHB17P-201ENST00000539533 2393 ntBASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD3Q3KNS1 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 FLJ38576-201ENST00000623820 2459 ntBASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 UNC93B6-202ENST00000528242 690 ntBASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 DUX4L17-201ENST00000557360 1267 ntBASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 AC034105.1-201ENST00000563488 319 ntBASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 AC006557.2-201ENST00000592985 1240 ntBASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 AL356488.2-201ENST00000602755 427 ntBASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 MIR1199-201ENST00000621445 119 ntBASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
PTCHD3Q3KNS1 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 PMS2P7-201ENST00000506558 1336 ntBASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 AC140113.2-201ENST00000604370 208 ntBASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms