Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
BDNFP23560 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
BDNFP23560 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
BDNFP23560 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
BDNFP23560 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.83■□□□□ 0.44
BDNFP23560 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
BDNFP23560 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
BDNFP23560 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
BDNFP23560 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 AC131009.4-201ENST00000624048 1740 ntBASIC17.82■□□□□ 0.44
BDNFP23560 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.82■□□□□ 0.44
BDNFP23560 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.82■□□□□ 0.44
BDNFP23560 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.82■□□□□ 0.44
BDNFP23560 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
BDNFP23560 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.82■□□□□ 0.44
BDNFP23560 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.82■□□□□ 0.44
BDNFP23560 AC091167.2-201ENST00000579581 588 ntBASIC17.82■□□□□ 0.44
BDNFP23560 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.82■□□□□ 0.44
BDNFP23560 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.82■□□□□ 0.44
BDNFP23560 AC079781.4-201ENST00000641908 219 ntBASIC17.82■□□□□ 0.44
BDNFP23560 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.82■□□□□ 0.44
BDNFP23560 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.82■□□□□ 0.44
BDNFP23560 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.82■□□□□ 0.44
BDNFP23560 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.82■□□□□ 0.44
BDNFP23560 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
BDNFP23560 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
BDNFP23560 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
BDNFP23560 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
BDNFP23560 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BDNFP23560 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.81■□□□□ 0.44
BDNFP23560 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
BDNFP23560 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
BDNFP23560 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
BDNFP23560 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.81■□□□□ 0.44
BDNFP23560 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.81■□□□□ 0.44
BDNFP23560 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
BDNFP23560 HCG4-201ENST00000418983 998 ntBASIC17.81■□□□□ 0.44
BDNFP23560 AP006288.1-201ENST00000446065 395 ntBASIC17.81■□□□□ 0.44
BDNFP23560 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.81■□□□□ 0.44
BDNFP23560 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.81■□□□□ 0.44
BDNFP23560 AC112191.1-201ENST00000523689 701 ntBASIC17.81■□□□□ 0.44
BDNFP23560 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.81■□□□□ 0.44
BDNFP23560 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.81■□□□□ 0.44
BDNFP23560 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.81■□□□□ 0.44
BDNFP23560 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
BDNFP23560 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.81■□□□□ 0.44
BDNFP23560 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
BDNFP23560 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
BDNFP23560 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.81■□□□□ 0.44
BDNFP23560 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BDNFP23560 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
BDNFP23560 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.8■□□□□ 0.44
BDNFP23560 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
BDNFP23560 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
BDNFP23560 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BDNFP23560 AC002056.1-201ENST00000395613 760 ntBASIC17.8■□□□□ 0.44
BDNFP23560 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.8■□□□□ 0.44
BDNFP23560 ACTG1P14-201ENST00000446382 1122 ntBASIC17.8■□□□□ 0.44
BDNFP23560 AC092183.1-201ENST00000469884 875 ntBASIC17.8■□□□□ 0.44
BDNFP23560 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
BDNFP23560 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.8■□□□□ 0.44
BDNFP23560 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.8■□□□□ 0.44
BDNFP23560 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.8■□□□□ 0.44
BDNFP23560 AC087641.1-201ENST00000557561 1021 ntBASIC17.8■□□□□ 0.44
BDNFP23560 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms