Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC34.02■■■■□ 3.04
MSH6P52701 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.04
MSH6P52701 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC34■■■■□ 3.03
MSH6P52701 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC34■■■■□ 3.03
MSH6P52701 EBPL-204ENST00000378272 766 ntTSL 3 BASIC34■■■■□ 3.03
MSH6P52701 ZNRF2P3-201ENST00000424200 374 ntBASIC34■■■■□ 3.03
MSH6P52701 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC34■■■■□ 3.03
MSH6P52701 MIR4466-201ENST00000606121 54 ntBASIC34■■■■□ 3.03
MSH6P52701 ST7-205ENST00000393446 2114 ntTSL 5 BASIC34■■■■□ 3.03
MSH6P52701 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC34■■■■□ 3.03
MSH6P52701 ABCB10P3-201ENST00000561950 2166 ntBASIC34■■■■□ 3.03
MSH6P52701 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC33.99■■■■□ 3.03
MSH6P52701 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC33.99■■■■□ 3.03
MSH6P52701 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC33.99■■■■□ 3.03
MSH6P52701 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC33.99■■■■□ 3.03
MSH6P52701 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC33.99■■■■□ 3.03
MSH6P52701 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
MSH6P52701 MIR6724-1-201ENST00000616420 92 ntBASIC33.99■■■■□ 3.03
MSH6P52701 MIR6724-2-201ENST00000616483 92 ntBASIC33.99■■■■□ 3.03
MSH6P52701 MIR6724-4-201ENST00000617390 92 ntBASIC33.99■■■■□ 3.03
MSH6P52701 MIR6724-3-201ENST00000622482 92 ntBASIC33.99■■■■□ 3.03
MSH6P52701 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC33.99■■■■□ 3.03
MSH6P52701 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
MSH6P52701 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC33.99■■■■□ 3.03
MSH6P52701 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
MSH6P52701 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
MSH6P52701 AC010997.5-201ENST00000609182 354 ntBASIC33.98■■■■□ 3.03
MSH6P52701 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
MSH6P52701 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC33.98■■■■□ 3.03
MSH6P52701 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC33.98■■■■□ 3.03
MSH6P52701 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
MSH6P52701 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC33.98■■■■□ 3.03
MSH6P52701 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC33.97■■■■□ 3.03
MSH6P52701 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC33.97■■■■□ 3.03
MSH6P52701 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
MSH6P52701 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
MSH6P52701 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC33.95■■■■□ 3.03
MSH6P52701 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC33.95■■■■□ 3.03
MSH6P52701 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC33.95■■■■□ 3.03
MSH6P52701 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC33.95■■■■□ 3.03
MSH6P52701 AC026271.2-201ENST00000428091 497 ntBASIC33.95■■■■□ 3.02
MSH6P52701 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC33.94■■■■□ 3.02
MSH6P52701 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC33.94■■■■□ 3.02
MSH6P52701 AC104564.3-201ENST00000582367 638 ntBASIC33.93■■■■□ 3.02
MSH6P52701 AL356740.2-201ENST00000601559 647 ntBASIC33.93■■■■□ 3.02
MSH6P52701 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC33.92■■■■□ 3.02
MSH6P52701 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC33.92■■■■□ 3.02
MSH6P52701 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC33.92■■■■□ 3.02
MSH6P52701 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC33.91■■■■□ 3.02
MSH6P52701 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC33.91■■■■□ 3.02
MSH6P52701 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC33.91■■■■□ 3.02
MSH6P52701 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC33.91■■■■□ 3.02
MSH6P52701 MTDHP2-201ENST00000601468 714 ntBASIC33.91■■■■□ 3.02
MSH6P52701 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC33.91■■■■□ 3.02
MSH6P52701 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC33.9■■■■□ 3.02
MSH6P52701 MIR4281-201ENST00000580852 62 ntBASIC33.9■■■■□ 3.02
MSH6P52701 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC33.9■■■■□ 3.02
MSH6P52701 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
MSH6P52701 ST7-202ENST00000323984 2142 ntTSL 5 BASIC33.89■■■■□ 3.02
MSH6P52701 ST7-207ENST00000393449 2127 ntTSL 5 BASIC33.89■■■■□ 3.02
MSH6P52701 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC33.89■■■■□ 3.02
MSH6P52701 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
MSH6P52701 LSM4-201ENST00000252816 986 ntTSL 2 BASIC33.88■■■■□ 3.01
MSH6P52701 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
MSH6P52701 AL512631.2-201ENST00000604634 923 ntBASIC33.88■■■■□ 3.01
MSH6P52701 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC33.88■■■■□ 3.01
MSH6P52701 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC33.87■■■■□ 3.01
MSH6P52701 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
MSH6P52701 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC33.87■■■■□ 3.01
MSH6P52701 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
MSH6P52701 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC33.86■■■■□ 3.01
MSH6P52701 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
MSH6P52701 QDPR-206ENST00000508623 601 ntTSL 3 BASIC33.85■■■■□ 3.01
MSH6P52701 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC33.85■■■■□ 3.01
MSH6P52701 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
MSH6P52701 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC33.85■■■■□ 3.01
MSH6P52701 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC33.85■■■■□ 3.01
MSH6P52701 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
MSH6P52701 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC33.84■■■■□ 3.01
MSH6P52701 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC33.84■■■■□ 3.01
MSH6P52701 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC33.84■■■■□ 3.01
MSH6P52701 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC33.84■■■■□ 3.01
MSH6P52701 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC33.84■■■■□ 3.01
MSH6P52701 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC33.84■■■■□ 3.01
MSH6P52701 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
MSH6P52701 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC33.83■■■■□ 3.01
MSH6P52701 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
MSH6P52701 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC33.82■■■■□ 3
MSH6P52701 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC33.82■■■■□ 3
MSH6P52701 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC33.81■■■■□ 3
MSH6P52701 AC135279.3-201ENST00000610945 1311 ntBASIC33.81■■■■□ 3
MSH6P52701 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC33.81■■■■□ 3
MSH6P52701 MIR5787-201ENST00000611784 55 ntBASIC33.81■■■■□ 3
MSH6P52701 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC33.8■■■■□ 3
MSH6P52701 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC33.8■■■■□ 3
MSH6P52701 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC33.8■■■■□ 3
MSH6P52701 AC142381.2-201ENST00000566120 298 ntBASIC33.8■■■■□ 3
MSH6P52701 AC106739.1-201ENST00000617035 715 ntBASIC33.8■■■■□ 3
MSH6P52701 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC33.79■■■■□ 3
MSH6P52701 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC33.79■■■■□ 3
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms