Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 MIR4515-201ENST00000584082 81 ntBASIC17.03■□□□□ 0.32
DKK3Q9UBP4 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 AC010327.4-202ENST00000591484 748 ntBASIC17.03■□□□□ 0.32
DKK3Q9UBP4 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 C20orf181-201ENST00000623918 480 ntBASIC17.03■□□□□ 0.32
DKK3Q9UBP4 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 KRT8P49-201ENST00000604166 1432 ntBASIC17.03■□□□□ 0.32
DKK3Q9UBP4 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.03■□□□□ 0.32
DKK3Q9UBP4 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 MIR1233-2-201ENST00000408138 82 ntBASIC17.02■□□□□ 0.32
DKK3Q9UBP4 MIR1233-1-201ENST00000408722 82 ntBASIC17.02■□□□□ 0.32
DKK3Q9UBP4 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 MKNK2P1-201ENST00000437526 628 ntBASIC17.02■□□□□ 0.32
DKK3Q9UBP4 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 AC112482.1-201ENST00000492080 688 ntBASIC17.02■□□□□ 0.32
DKK3Q9UBP4 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 AL031432.2-201ENST00000566714 459 ntBASIC17.02■□□□□ 0.32
DKK3Q9UBP4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 AL928711.1-201ENST00000570165 459 ntBASIC17.02■□□□□ 0.32
DKK3Q9UBP4 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 AC139530.3-201ENST00000620344 690 ntBASIC17.02■□□□□ 0.32
DKK3Q9UBP4 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
DKK3Q9UBP4 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
DKK3Q9UBP4 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
DKK3Q9UBP4 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
DKK3Q9UBP4 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
DKK3Q9UBP4 FER1L4-210ENST00000615531 5998 ntBASIC17.02■□□□□ 0.31
DKK3Q9UBP4 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
DKK3Q9UBP4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.02■□□□□ 0.31
DKK3Q9UBP4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 HCG4-201ENST00000418983 998 ntBASIC17.01■□□□□ 0.31
DKK3Q9UBP4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DKK3Q9UBP4 TUBB8P12-201ENST00000308911 1335 ntBASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms