Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 PMS2P7-201ENST00000506558 1336 ntBASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 AC002310.6-201ENST00000624451 1377 ntBASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM39Q9HCM9 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM39Q9HCM9 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM39Q9HCM9 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.83■□□□□ 0.29
TRIM39Q9HCM9 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM39Q9HCM9 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
TRIM39Q9HCM9 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
TRIM39Q9HCM9 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM39Q9HCM9 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM39Q9HCM9 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM39Q9HCM9 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM39Q9HCM9 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 AC124947.2-201ENST00000547118 1133 ntBASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 NFIC-211ENST00000641145 8399 ntBASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM39Q9HCM9 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 IGLL3P-201ENST00000412472 434 ntBASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM39Q9HCM9 KRT18P2-201ENST00000447938 1258 ntBASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms