Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 AC092865.5-201ENST00000545435 363 ntBASIC17.05■□□□□ 0.32
LHX3Q9UBR4 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 AC068137.2-201ENST00000605408 478 ntBASIC17.05■□□□□ 0.32
LHX3Q9UBR4 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.05■□□□□ 0.32
LHX3Q9UBR4 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.05■□□□□ 0.32
LHX3Q9UBR4 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
LHX3Q9UBR4 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 ALG1L5P-201ENST00000482043 771 ntBASIC17.04■□□□□ 0.32
LHX3Q9UBR4 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 AP002472.1-201ENST00000577490 586 ntBASIC17.04■□□□□ 0.32
LHX3Q9UBR4 AC010327.4-202ENST00000591484 748 ntBASIC17.04■□□□□ 0.32
LHX3Q9UBR4 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 MTDHP5-201ENST00000598980 586 ntBASIC17.04■□□□□ 0.32
LHX3Q9UBR4 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LHX3Q9UBR4 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 SNX33P1-201ENST00000592116 1762 ntBASIC17.03■□□□□ 0.32
LHX3Q9UBR4 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 GPX1P2-201ENST00000429271 606 ntBASIC17.03■□□□□ 0.32
LHX3Q9UBR4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 AL078644.1-201ENST00000609881 752 ntBASIC17.03■□□□□ 0.32
LHX3Q9UBR4 AC090340.1-201ENST00000620778 4980 ntBASIC17.03■□□□□ 0.32
LHX3Q9UBR4 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 AL391256.1-201ENST00000443260 1855 ntBASIC17.03■□□□□ 0.32
LHX3Q9UBR4 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LHX3Q9UBR4 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
LHX3Q9UBR4 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
LHX3Q9UBR4 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms