Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
ABCA3Q99758 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
ABCA3Q99758 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
ABCA3Q99758 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
ABCA3Q99758 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC22.22■■□□□ 1.15
ABCA3Q99758 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC22.21■■□□□ 1.15
ABCA3Q99758 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
ABCA3Q99758 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC22.21■■□□□ 1.15
ABCA3Q99758 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC22.21■■□□□ 1.15
ABCA3Q99758 AC093726.1-201ENST00000608064 963 ntBASIC22.21■■□□□ 1.15
ABCA3Q99758 AC133552.6-201ENST00000613406 534 ntBASIC22.21■■□□□ 1.15
ABCA3Q99758 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
ABCA3Q99758 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC22.21■■□□□ 1.15
ABCA3Q99758 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
ABCA3Q99758 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC22.21■■□□□ 1.15
ABCA3Q99758 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
ABCA3Q99758 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
ABCA3Q99758 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.15
ABCA3Q99758 WDR53-204ENST00000433160 887 ntTSL 5 BASIC22.2■■□□□ 1.14
ABCA3Q99758 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC22.2■■□□□ 1.14
ABCA3Q99758 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.14
ABCA3Q99758 RRP7BP-205ENST00000566851 833 ntBASIC22.2■■□□□ 1.14
ABCA3Q99758 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC22.2■■□□□ 1.14
ABCA3Q99758 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
ABCA3Q99758 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
ABCA3Q99758 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC22.2■■□□□ 1.14
ABCA3Q99758 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
ABCA3Q99758 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
ABCA3Q99758 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC22.2■■□□□ 1.14
ABCA3Q99758 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.14
ABCA3Q99758 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC22.2■■□□□ 1.14
ABCA3Q99758 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC22.2■■□□□ 1.14
ABCA3Q99758 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC22.2■■□□□ 1.14
ABCA3Q99758 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC22.2■■□□□ 1.14
ABCA3Q99758 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
ABCA3Q99758 RPL28-204ENST00000431533 590 ntTSL 2 BASIC22.2■■□□□ 1.14
ABCA3Q99758 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC22.2■■□□□ 1.14
ABCA3Q99758 MYCLP2-201ENST00000449268 967 ntBASIC22.2■■□□□ 1.14
ABCA3Q99758 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
ABCA3Q99758 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC22.2■■□□□ 1.14
ABCA3Q99758 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC22.2■■□□□ 1.14
ABCA3Q99758 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
ABCA3Q99758 RPL28-206ENST00000558752 671 ntTSL 3 BASIC22.2■■□□□ 1.14
ABCA3Q99758 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC22.2■■□□□ 1.14
ABCA3Q99758 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
ABCA3Q99758 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC22.19■■□□□ 1.14
ABCA3Q99758 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
ABCA3Q99758 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
ABCA3Q99758 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
ABCA3Q99758 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
ABCA3Q99758 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC22.19■■□□□ 1.14
ABCA3Q99758 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC22.19■■□□□ 1.14
ABCA3Q99758 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC22.19■■□□□ 1.14
ABCA3Q99758 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
ABCA3Q99758 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
ABCA3Q99758 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC22.19■■□□□ 1.14
ABCA3Q99758 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
ABCA3Q99758 AL355994.2-201ENST00000447882 704 ntBASIC22.19■■□□□ 1.14
ABCA3Q99758 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC22.19■■□□□ 1.14
ABCA3Q99758 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
ABCA3Q99758 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
ABCA3Q99758 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC22.19■■□□□ 1.14
ABCA3Q99758 MIR4538-201ENST00000581377 78 ntBASIC22.19■■□□□ 1.14
ABCA3Q99758 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
ABCA3Q99758 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC22.19■■□□□ 1.14
ABCA3Q99758 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
ABCA3Q99758 AC084346.2-201ENST00000607097 949 ntBASIC22.19■■□□□ 1.14
ABCA3Q99758 FHL2-212ENST00000607522 759 ntTSL 2 BASIC22.19■■□□□ 1.14
ABCA3Q99758 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
ABCA3Q99758 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
ABCA3Q99758 TNXA-203ENST00000507684 2038 ntBASIC22.18■■□□□ 1.14
ABCA3Q99758 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
ABCA3Q99758 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
ABCA3Q99758 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
ABCA3Q99758 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
ABCA3Q99758 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
ABCA3Q99758 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
ABCA3Q99758 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC22.18■■□□□ 1.14
ABCA3Q99758 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC22.18■■□□□ 1.14
ABCA3Q99758 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC22.18■■□□□ 1.14
ABCA3Q99758 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC22.18■■□□□ 1.14
ABCA3Q99758 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
ABCA3Q99758 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC22.18■■□□□ 1.14
ABCA3Q99758 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC22.18■■□□□ 1.14
ABCA3Q99758 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
ABCA3Q99758 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC22.18■■□□□ 1.14
ABCA3Q99758 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC22.18■■□□□ 1.14
ABCA3Q99758 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms