Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 FAM197Y8-203ENST00000450145 560 ntBASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CCDC116Q8IYX3 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 OR7E14P-202ENST00000530490 1290 ntBASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 TERC-201ENST00000602385 541 ntBASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 AL691432.3-201ENST00000621860 400 ntBASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 TP73-AS1-207ENST00000624167 988 ntBASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 AC107918.4-202ENST00000641623 219 ntBASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 AC006504.4-201ENST00000592118 1568 ntBASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
CCDC116Q8IYX3 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 AC004870.1-201ENST00000315132 882 ntBASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 PTCHD3P3-201ENST00000403073 906 ntBASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 LAGE3P1-201ENST00000425356 484 ntBASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 AC079781.3-201ENST00000449110 356 ntBASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 KRT126P-201ENST00000549467 1181 ntBASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.02■□□□□ 0.16
CCDC116Q8IYX3 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
CCDC116Q8IYX3 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC116Q8IYX3 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC116Q8IYX3 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC116Q8IYX3 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.02■□□□□ 0.15
CCDC116Q8IYX3 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.02■□□□□ 0.15
CCDC116Q8IYX3 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC116Q8IYX3 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
CCDC116Q8IYX3 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms