Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
USP54Q70EL1 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC22.28■■□□□ 1.16
USP54Q70EL1 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP54Q70EL1 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC22.28■■□□□ 1.16
USP54Q70EL1 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
USP54Q70EL1 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP54Q70EL1 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
USP54Q70EL1 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC22.28■■□□□ 1.16
USP54Q70EL1 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC22.28■■□□□ 1.16
USP54Q70EL1 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC22.28■■□□□ 1.16
USP54Q70EL1 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC22.28■■□□□ 1.16
USP54Q70EL1 STOM-203ENST00000538954 1257 ntTSL 5 BASIC22.28■■□□□ 1.16
USP54Q70EL1 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC22.28■■□□□ 1.16
USP54Q70EL1 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP54Q70EL1 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC22.28■■□□□ 1.16
USP54Q70EL1 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC22.28■■□□□ 1.16
USP54Q70EL1 IGHV3-72-202ENST00000621503 303 ntBASIC22.28■■□□□ 1.16
USP54Q70EL1 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP54Q70EL1 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP54Q70EL1 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
USP54Q70EL1 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP54Q70EL1 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC22.28■■□□□ 1.16
USP54Q70EL1 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP54Q70EL1 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
USP54Q70EL1 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP54Q70EL1 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
USP54Q70EL1 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
USP54Q70EL1 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
USP54Q70EL1 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC22.27■■□□□ 1.16
USP54Q70EL1 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
USP54Q70EL1 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
USP54Q70EL1 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
USP54Q70EL1 AC105021.1-202ENST00000570572 669 ntBASIC22.27■■□□□ 1.16
USP54Q70EL1 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC22.27■■□□□ 1.16
USP54Q70EL1 AL662799.1-202ENST00000614205 422 ntBASIC22.27■■□□□ 1.16
USP54Q70EL1 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC22.27■■□□□ 1.16
USP54Q70EL1 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
USP54Q70EL1 AC067852.2-201ENST00000590513 2313 ntBASIC22.27■■□□□ 1.16
USP54Q70EL1 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC22.27■■□□□ 1.16
USP54Q70EL1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
USP54Q70EL1 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC22.27■■□□□ 1.16
USP54Q70EL1 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
USP54Q70EL1 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC22.26■■□□□ 1.15
USP54Q70EL1 API5-211ENST00000534695 560 ntTSL 5 BASIC22.26■■□□□ 1.15
USP54Q70EL1 AL596325.1-201ENST00000563991 1082 ntBASIC22.26■■□□□ 1.15
USP54Q70EL1 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC22.26■■□□□ 1.15
USP54Q70EL1 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC22.26■■□□□ 1.15
USP54Q70EL1 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
USP54Q70EL1 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
USP54Q70EL1 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
USP54Q70EL1 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
USP54Q70EL1 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
USP54Q70EL1 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC22.26■■□□□ 1.15
USP54Q70EL1 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC22.26■■□□□ 1.15
USP54Q70EL1 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC22.26■■□□□ 1.15
USP54Q70EL1 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
USP54Q70EL1 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
USP54Q70EL1 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
USP54Q70EL1 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC22.26■■□□□ 1.15
USP54Q70EL1 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
USP54Q70EL1 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP54Q70EL1 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP54Q70EL1 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP54Q70EL1 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC22.25■■□□□ 1.15
USP54Q70EL1 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
USP54Q70EL1 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
USP54Q70EL1 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP54Q70EL1 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
USP54Q70EL1 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC22.25■■□□□ 1.15
USP54Q70EL1 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
USP54Q70EL1 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC22.25■■□□□ 1.15
USP54Q70EL1 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC22.25■■□□□ 1.15
USP54Q70EL1 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC22.25■■□□□ 1.15
USP54Q70EL1 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC22.25■■□□□ 1.15
USP54Q70EL1 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC22.25■■□□□ 1.15
USP54Q70EL1 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP54Q70EL1 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
USP54Q70EL1 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
USP54Q70EL1 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP54Q70EL1 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP54Q70EL1 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
USP54Q70EL1 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
USP54Q70EL1 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
USP54Q70EL1 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
USP54Q70EL1 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC22.24■■□□□ 1.15
USP54Q70EL1 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
USP54Q70EL1 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC22.24■■□□□ 1.15
USP54Q70EL1 MTND6P24-201ENST00000440466 518 ntBASIC22.24■■□□□ 1.15
USP54Q70EL1 AL358472.5-202ENST00000641448 1267 ntBASIC22.24■■□□□ 1.15
USP54Q70EL1 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC22.24■■□□□ 1.15
USP54Q70EL1 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
USP54Q70EL1 BTBD7P1-201ENST00000447253 1453 ntBASIC22.24■■□□□ 1.15
USP54Q70EL1 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
USP54Q70EL1 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC22.24■■□□□ 1.15
USP54Q70EL1 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
USP54Q70EL1 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
USP54Q70EL1 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
USP54Q70EL1 PC-204ENST00000524491 1714 ntTSL 2 BASIC22.23■■□□□ 1.15
USP54Q70EL1 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP54Q70EL1 EDF1-203ENST00000371649 790 ntTSL 2 BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms