Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.4■□□□□ 0.7
SMARCA1P28370 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.4■□□□□ 0.7
SMARCA1P28370 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC19.4■□□□□ 0.7
SMARCA1P28370 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 HLA-J-202ENST00000469281 1241 ntBASIC19.4■□□□□ 0.7
SMARCA1P28370 AC005829.1-201ENST00000570002 483 ntBASIC19.4■□□□□ 0.7
SMARCA1P28370 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.4■□□□□ 0.7
SMARCA1P28370 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SMARCA1P28370 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SMARCA1P28370 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.4■□□□□ 0.7
SMARCA1P28370 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
SMARCA1P28370 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCA1P28370 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.4■□□□□ 0.7
SMARCA1P28370 AC092919.2-201ENST00000623631 1645 ntBASIC19.4■□□□□ 0.7
SMARCA1P28370 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SMARCA1P28370 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
SMARCA1P28370 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.7
SMARCA1P28370 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.39■□□□□ 0.7
SMARCA1P28370 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
SMARCA1P28370 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC19.39■□□□□ 0.69
SMARCA1P28370 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCA1P28370 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCA1P28370 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SMARCA1P28370 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.39■□□□□ 0.69
SMARCA1P28370 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SMARCA1P28370 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCA1P28370 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.39■□□□□ 0.69
SMARCA1P28370 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.39■□□□□ 0.69
SMARCA1P28370 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.39■□□□□ 0.69
SMARCA1P28370 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SMARCA1P28370 MIR3687-2-201ENST00000577708 61 ntBASIC19.39■□□□□ 0.69
SMARCA1P28370 AL031055.1-201ENST00000606362 631 ntBASIC19.39■□□□□ 0.69
SMARCA1P28370 MIR3687-1-201ENST00000614492 61 ntBASIC19.39■□□□□ 0.69
SMARCA1P28370 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCA1P28370 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCA1P28370 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.39■□□□□ 0.69
SMARCA1P28370 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
SMARCA1P28370 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCA1P28370 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.39■□□□□ 0.69
SMARCA1P28370 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCA1P28370 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCA1P28370 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCA1P28370 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SMARCA1P28370 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
SMARCA1P28370 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCA1P28370 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCA1P28370 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCA1P28370 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCA1P28370 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SMARCA1P28370 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.38■□□□□ 0.69
SMARCA1P28370 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.38■□□□□ 0.69
SMARCA1P28370 KRT18P13-201ENST00000400056 1290 ntBASIC19.38■□□□□ 0.69
SMARCA1P28370 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.38■□□□□ 0.69
SMARCA1P28370 HTR5BP-201ENST00000430851 1154 ntBASIC19.38■□□□□ 0.69
SMARCA1P28370 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCA1P28370 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCA1P28370 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.38■□□□□ 0.69
SMARCA1P28370 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCA1P28370 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.38■□□□□ 0.69
SMARCA1P28370 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC19.38■□□□□ 0.69
SMARCA1P28370 AC092865.5-201ENST00000545435 363 ntBASIC19.38■□□□□ 0.69
SMARCA1P28370 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.38■□□□□ 0.69
SMARCA1P28370 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCA1P28370 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.38■□□□□ 0.69
SMARCA1P28370 AC021097.1-201ENST00000607902 574 ntBASIC19.38■□□□□ 0.69
SMARCA1P28370 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.38■□□□□ 0.69
SMARCA1P28370 AC091812.2-201ENST00000619081 385 ntBASIC19.38■□□□□ 0.69
SMARCA1P28370 AC092902.6-201ENST00000641783 218 ntBASIC19.38■□□□□ 0.69
SMARCA1P28370 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SMARCA1P28370 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCA1P28370 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCA1P28370 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCA1P28370 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.38■□□□□ 0.69
SMARCA1P28370 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.37■□□□□ 0.69
SMARCA1P28370 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
SMARCA1P28370 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.37■□□□□ 0.69
SMARCA1P28370 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 AC005915.1-201ENST00000624912 2018 ntBASIC19.37■□□□□ 0.69
SMARCA1P28370 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 AC020916.1-201ENST00000587762 1774 ntBASIC19.37■□□□□ 0.69
SMARCA1P28370 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCA1P28370 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms