Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 AC004835.2-201ENST00000603762 682 ntBASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 WT1-AS_2.1-201ENST00000613208 137 ntBASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 AC005332.8-201ENST00000622750 2735 ntBASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UBE3BQ7Z3V4 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 AC092068.3-201ENST00000587894 2016 ntBASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 AL139400.1-201ENST00000366220 510 ntBASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 AC087641.1-201ENST00000557561 1021 ntBASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 AC026120.1-201ENST00000611536 926 ntBASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
UBE3BQ7Z3V4 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 RNU1-129P-201ENST00000384064 167 ntBASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 MTRF1LP2-201ENST00000506027 1122 ntBASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 AC124947.2-201ENST00000547118 1133 ntBASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 AC093520.2-201ENST00000561830 333 ntBASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 U1.21-201ENST00000580816 167 ntBASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 RPS15-207ENST00000591032 550 ntTSL 3 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 PCDHB18P-201ENST00000524813 2368 ntBASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
UBE3BQ7Z3V4 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 TSEN15P1-201ENST00000423257 515 ntBASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 AL135744.1-201ENST00000565098 629 ntBASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UBE3BQ7Z3V4 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UBE3BQ7Z3V4 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC21.09■□□□□ 0.97
UBE3BQ7Z3V4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms