Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC016396.2-201ENST00000562575 1417 ntBASIC20.58■□□□□ 0.88
CCDC88AQ3V6T2 AC104794.3-201ENST00000566840 1248 ntBASIC20.58■□□□□ 0.88
CCDC88AQ3V6T2 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
CCDC88AQ3V6T2 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 POLE2-203ENST00000553805 496 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 AC007431.3-201ENST00000623221 587 ntBASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC88AQ3V6T2 SLC22A20-204ENST00000530038 1673 ntBASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 AC016027.1-202ENST00000607927 1699 ntBASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 MIR6799-201ENST00000620297 69 ntBASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 SLC7A15P-201ENST00000424028 1363 ntBASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 MIR658-201ENST00000385210 100 ntBASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 AL080243.2-201ENST00000418783 582 ntBASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 TMEM14DP-201ENST00000422205 345 ntBASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 AC142381.1-201ENST00000426099 345 ntBASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 AC109635.5-201ENST00000533593 962 ntBASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 AL391825.1-201ENST00000457671 1364 ntBASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 AL353732.1-201ENST00000569618 1459 ntBASIC20.56■□□□□ 0.88
CCDC88AQ3V6T2 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 PP14571-201ENST00000404327 934 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 INE1-201ENST00000456273 945 ntBASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC88AQ3V6T2 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 MIR346-201ENST00000362234 95 ntBASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 HCG4-201ENST00000418983 998 ntBASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 AL138918.1-201ENST00000568306 659 ntBASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 SPTSSB-204ENST00000617024 1292 ntBASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms