Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AP005117.1-201ENST00000584346 1413 ntBASIC16.05■□□□□ 0.16
RFX3P48380 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.05■□□□□ 0.16
RFX3P48380 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.05■□□□□ 0.16
RFX3P48380 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.05■□□□□ 0.16
RFX3P48380 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.05■□□□□ 0.16
RFX3P48380 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.05■□□□□ 0.16
RFX3P48380 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
RFX3P48380 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.05■□□□□ 0.16
RFX3P48380 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.05■□□□□ 0.16
RFX3P48380 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.05■□□□□ 0.16
RFX3P48380 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.05■□□□□ 0.16
RFX3P48380 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
RFX3P48380 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.05■□□□□ 0.16
RFX3P48380 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
RFX3P48380 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.04■□□□□ 0.16
RFX3P48380 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
RFX3P48380 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.04■□□□□ 0.16
RFX3P48380 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.04■□□□□ 0.16
RFX3P48380 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
RFX3P48380 AC007326.2-201ENST00000624224 7579 ntBASIC16.04■□□□□ 0.16
RFX3P48380 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
RFX3P48380 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 AC022211.2-201ENST00000585075 2527 ntBASIC16.04■□□□□ 0.16
RFX3P48380 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.04■□□□□ 0.16
RFX3P48380 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
RFX3P48380 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.04■□□□□ 0.16
RFX3P48380 SPDYE21P-201ENST00000413323 827 ntBASIC16.04■□□□□ 0.16
RFX3P48380 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.04■□□□□ 0.16
RFX3P48380 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
RFX3P48380 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.04■□□□□ 0.16
RFX3P48380 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.04■□□□□ 0.16
RFX3P48380 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.04■□□□□ 0.16
RFX3P48380 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.04■□□□□ 0.16
RFX3P48380 AC008608.2-201ENST00000606089 416 ntBASIC16.04■□□□□ 0.16
RFX3P48380 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
RFX3P48380 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.04■□□□□ 0.16
RFX3P48380 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.04■□□□□ 0.16
RFX3P48380 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFX3P48380 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
RFX3P48380 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.03■□□□□ 0.16
RFX3P48380 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
RFX3P48380 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.03■□□□□ 0.16
RFX3P48380 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
RFX3P48380 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.03■□□□□ 0.16
RFX3P48380 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
RFX3P48380 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
RFX3P48380 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.03■□□□□ 0.16
RFX3P48380 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
RFX3P48380 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.03■□□□□ 0.16
RFX3P48380 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.03■□□□□ 0.16
RFX3P48380 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.03■□□□□ 0.16
RFX3P48380 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.03■□□□□ 0.16
RFX3P48380 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.03■□□□□ 0.16
RFX3P48380 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
RFX3P48380 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
RFX3P48380 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
RFX3P48380 AC097637.2-201ENST00000624096 1997 ntBASIC16.03■□□□□ 0.16
RFX3P48380 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
RFX3P48380 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.03■□□□□ 0.16
RFX3P48380 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms