Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LAGE3P1-201ENST00000425356 484 ntBASIC16.08■□□□□ 0.16
SOX3P41225 AP000347.1-202ENST00000435868 847 ntBASIC16.08■□□□□ 0.16
SOX3P41225 SIGLEC30P-201ENST00000455569 941 ntBASIC16.08■□□□□ 0.16
SOX3P41225 AC012640.2-201ENST00000561606 901 ntBASIC16.08■□□□□ 0.16
SOX3P41225 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.08■□□□□ 0.16
SOX3P41225 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.08■□□□□ 0.16
SOX3P41225 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
SOX3P41225 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.08■□□□□ 0.16
SOX3P41225 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.08■□□□□ 0.16
SOX3P41225 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.08■□□□□ 0.16
SOX3P41225 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.08■□□□□ 0.16
SOX3P41225 BX640515.1-201ENST00000617215 977 ntBASIC16.08■□□□□ 0.16
SOX3P41225 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.08■□□□□ 0.16
SOX3P41225 IL9RP2-201ENST00000423948 1312 ntBASIC16.08■□□□□ 0.16
SOX3P41225 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.08■□□□□ 0.16
SOX3P41225 AC105020.1-201ENST00000435356 2205 ntBASIC16.08■□□□□ 0.16
SOX3P41225 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
SOX3P41225 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.08■□□□□ 0.16
SOX3P41225 HLA-J-201ENST00000462773 1622 ntBASIC16.08■□□□□ 0.16
SOX3P41225 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
SOX3P41225 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
SOX3P41225 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
SOX3P41225 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX3P41225 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.08■□□□□ 0.16
SOX3P41225 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.07■□□□□ 0.16
SOX3P41225 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 AGGF1P2-201ENST00000426656 2106 ntBASIC16.07■□□□□ 0.16
SOX3P41225 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.07■□□□□ 0.16
SOX3P41225 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.07■□□□□ 0.16
SOX3P41225 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SOX3P41225 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.07■□□□□ 0.16
SOX3P41225 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.07■□□□□ 0.16
SOX3P41225 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.07■□□□□ 0.16
SOX3P41225 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.07■□□□□ 0.16
SOX3P41225 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.07■□□□□ 0.16
SOX3P41225 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.07■□□□□ 0.16
SOX3P41225 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.07■□□□□ 0.16
SOX3P41225 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.07■□□□□ 0.16
SOX3P41225 AC008735.5-201ENST00000623544 497 ntBASIC16.07■□□□□ 0.16
SOX3P41225 LINC01451-201ENST00000623792 534 ntBASIC16.07■□□□□ 0.16
SOX3P41225 AC116407.3-201ENST00000623905 1129 ntBASIC16.07■□□□□ 0.16
SOX3P41225 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
SOX3P41225 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
SOX3P41225 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.07■□□□□ 0.16
SOX3P41225 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.07■□□□□ 0.16
SOX3P41225 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
SOX3P41225 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
SOX3P41225 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
SOX3P41225 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
SOX3P41225 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.07■□□□□ 0.16
SOX3P41225 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX3P41225 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SOX3P41225 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 LINC00304-203ENST00000565008 1864 ntBASIC16.06■□□□□ 0.16
SOX3P41225 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.06■□□□□ 0.16
SOX3P41225 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.06■□□□□ 0.16
SOX3P41225 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.06■□□□□ 0.16
SOX3P41225 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.06■□□□□ 0.16
SOX3P41225 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.06■□□□□ 0.16
SOX3P41225 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.06■□□□□ 0.16
SOX3P41225 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.06■□□□□ 0.16
SOX3P41225 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.06■□□□□ 0.16
SOX3P41225 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.06■□□□□ 0.16
SOX3P41225 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.06■□□□□ 0.16
SOX3P41225 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.06■□□□□ 0.16
SOX3P41225 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.06■□□□□ 0.16
SOX3P41225 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms