Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SLC28A1O00337 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.42■□□□□ 0.22
SLC28A1O00337 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
SLC28A1O00337 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SLC28A1O00337 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.42■□□□□ 0.22
SLC28A1O00337 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SLC28A1O00337 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SLC28A1O00337 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SLC28A1O00337 LINC00982-205ENST00000420957 435 ntBASIC16.42■□□□□ 0.22
SLC28A1O00337 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.42■□□□□ 0.22
SLC28A1O00337 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.42■□□□□ 0.22
SLC28A1O00337 MIR5100-201ENST00000579544 119 ntBASIC16.42■□□□□ 0.22
SLC28A1O00337 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SLC28A1O00337 AC099336.1-202ENST00000602961 463 ntBASIC16.42■□□□□ 0.22
SLC28A1O00337 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.42■□□□□ 0.22
SLC28A1O00337 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.42■□□□□ 0.22
SLC28A1O00337 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
SLC28A1O00337 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SLC28A1O00337 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.42■□□□□ 0.22
SLC28A1O00337 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.42■□□□□ 0.22
SLC28A1O00337 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SLC28A1O00337 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.42■□□□□ 0.22
SLC28A1O00337 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SLC28A1O00337 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SLC28A1O00337 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SLC28A1O00337 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
SLC28A1O00337 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SLC28A1O00337 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SLC28A1O00337 AL645728.1-201ENST00000366221 2101 ntBASIC16.42■□□□□ 0.22
SLC28A1O00337 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.42■□□□□ 0.22
SLC28A1O00337 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
SLC28A1O00337 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.42■□□□□ 0.22
SLC28A1O00337 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.42■□□□□ 0.22
SLC28A1O00337 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SLC28A1O00337 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.41■□□□□ 0.22
SLC28A1O00337 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
SLC28A1O00337 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
SLC28A1O00337 AC079776.2-201ENST00000641154 1609 ntBASIC16.41■□□□□ 0.22
SLC28A1O00337 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.41■□□□□ 0.22
SLC28A1O00337 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.41■□□□□ 0.22
SLC28A1O00337 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SLC28A1O00337 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.41■□□□□ 0.22
SLC28A1O00337 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 AC092171.3-201ENST00000610122 2651 ntBASIC16.41■□□□□ 0.22
SLC28A1O00337 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SLC28A1O00337 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.41■□□□□ 0.22
SLC28A1O00337 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.41■□□□□ 0.22
SLC28A1O00337 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SLC28A1O00337 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.41■□□□□ 0.22
SLC28A1O00337 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.41■□□□□ 0.22
SLC28A1O00337 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.41■□□□□ 0.22
SLC28A1O00337 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.41■□□□□ 0.22
SLC28A1O00337 AC069148.1-201ENST00000608741 768 ntBASIC16.41■□□□□ 0.22
SLC28A1O00337 AC073592.4-201ENST00000623827 446 ntBASIC16.41■□□□□ 0.22
SLC28A1O00337 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.41■□□□□ 0.22
SLC28A1O00337 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.41■□□□□ 0.22
SLC28A1O00337 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
SLC28A1O00337 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
SLC28A1O00337 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SLC28A1O00337 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SLC28A1O00337 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SLC28A1O00337 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SLC28A1O00337 AC004817.3-201ENST00000602957 2129 ntBASIC16.4■□□□□ 0.22
SLC28A1O00337 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 HLA-A-202ENST00000376806 1854 ntBASIC16.4■□□□□ 0.22
SLC28A1O00337 AL391256.1-201ENST00000443260 1855 ntBASIC16.4■□□□□ 0.22
SLC28A1O00337 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SLC28A1O00337 AP002414.1-201ENST00000391405 1147 ntBASIC16.4■□□□□ 0.22
SLC28A1O00337 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.4■□□□□ 0.22
SLC28A1O00337 DUX4L17-201ENST00000557360 1267 ntBASIC16.4■□□□□ 0.22
SLC28A1O00337 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SLC28A1O00337 AL591684.3-201ENST00000605187 298 ntBASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms