Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AF186996.4-201ENST00000467186 377 ntBASIC17.83■□□□□ 0.44
HDAC4P56524 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.83■□□□□ 0.44
HDAC4P56524 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.83■□□□□ 0.44
HDAC4P56524 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.83■□□□□ 0.44
HDAC4P56524 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.83■□□□□ 0.44
HDAC4P56524 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.83■□□□□ 0.44
HDAC4P56524 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
HDAC4P56524 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
HDAC4P56524 AC006557.2-201ENST00000592985 1240 ntBASIC17.83■□□□□ 0.44
HDAC4P56524 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
HDAC4P56524 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
HDAC4P56524 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.83■□□□□ 0.44
HDAC4P56524 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.83■□□□□ 0.44
HDAC4P56524 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
HDAC4P56524 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.82■□□□□ 0.44
HDAC4P56524 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 AC243591.1-201ENST00000452967 1364 ntBASIC17.82■□□□□ 0.44
HDAC4P56524 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.82■□□□□ 0.44
HDAC4P56524 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
HDAC4P56524 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.82■□□□□ 0.44
HDAC4P56524 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
HDAC4P56524 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 AC012640.2-201ENST00000561606 901 ntBASIC17.82■□□□□ 0.44
HDAC4P56524 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.82■□□□□ 0.44
HDAC4P56524 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
HDAC4P56524 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.82■□□□□ 0.44
HDAC4P56524 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
HDAC4P56524 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HDAC4P56524 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.82■□□□□ 0.44
HDAC4P56524 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HDAC4P56524 AC106886.4-201ENST00000623557 2502 ntBASIC17.81■□□□□ 0.44
HDAC4P56524 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.81■□□□□ 0.44
HDAC4P56524 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 AC084018.2-201ENST00000613093 2607 ntBASIC17.81■□□□□ 0.44
HDAC4P56524 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 MRPL3P1-201ENST00000400109 1033 ntBASIC17.81■□□□□ 0.44
HDAC4P56524 PTCHD3P3-201ENST00000403073 906 ntBASIC17.81■□□□□ 0.44
HDAC4P56524 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.81■□□□□ 0.44
HDAC4P56524 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.81■□□□□ 0.44
HDAC4P56524 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.81■□□□□ 0.44
HDAC4P56524 TERC-201ENST00000602385 541 ntBASIC17.81■□□□□ 0.44
HDAC4P56524 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.81■□□□□ 0.44
HDAC4P56524 AC008735.5-201ENST00000623544 497 ntBASIC17.81■□□□□ 0.44
HDAC4P56524 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.81■□□□□ 0.44
HDAC4P56524 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HDAC4P56524 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.81■□□□□ 0.44
HDAC4P56524 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.81■□□□□ 0.44
HDAC4P56524 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDAC4P56524 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
HDAC4P56524 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.81■□□□□ 0.44
HDAC4P56524 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.8■□□□□ 0.44
HDAC4P56524 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.8■□□□□ 0.44
HDAC4P56524 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.8■□□□□ 0.44
HDAC4P56524 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms