Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.21■□□□□ 0.5
SMIM28A0A1B0GU29 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SMIM28A0A1B0GU29 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SMIM28A0A1B0GU29 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SMIM28A0A1B0GU29 AC131009.4-201ENST00000624048 1740 ntBASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 PCDHB18P-201ENST00000524813 2368 ntBASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 AL121761.2-201ENST00000598007 1648 ntBASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 ADH5P3-201ENST00000433842 1137 ntBASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 AC105339.1-204ENST00000636249 355 ntBASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.2■□□□□ 0.5
SMIM28A0A1B0GU29 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 AL671277.1-201ENST00000429656 993 ntBASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 AC087641.1-201ENST00000557561 1021 ntBASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 AL513210.1-201ENST00000629608 234 ntBASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMIM28A0A1B0GU29 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 AC092068.3-201ENST00000587894 2016 ntBASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 AL355306.1-201ENST00000415580 579 ntBASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 AP000344.2-201ENST00000512987 629 ntBASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 MIR4492-201ENST00000581627 80 ntBASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 AL009183.1-201ENST00000603760 355 ntBASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 AC108860.2-201ENST00000562760 2183 ntBASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMIM28A0A1B0GU29 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms