Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 AC013467.2-201ENST00000605472 835 ntBASIC18.28■□□□□ 0.52
SIX2Q9NPC8 REXO1L3P-201ENST00000622202 1288 ntBASIC18.28■□□□□ 0.52
SIX2Q9NPC8 TP73-AS1-207ENST00000624167 988 ntBASIC18.28■□□□□ 0.52
SIX2Q9NPC8 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 AC107918.4-202ENST00000641623 219 ntBASIC18.28■□□□□ 0.52
SIX2Q9NPC8 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 AC002310.6-201ENST00000624451 1377 ntBASIC18.28■□□□□ 0.52
SIX2Q9NPC8 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 SNX33P1-201ENST00000592116 1762 ntBASIC18.27■□□□□ 0.52
SIX2Q9NPC8 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 KRT18P27-201ENST00000427733 1299 ntBASIC18.27■□□□□ 0.52
SIX2Q9NPC8 AC087163.2-201ENST00000457299 853 ntBASIC18.27■□□□□ 0.52
SIX2Q9NPC8 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
SIX2Q9NPC8 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 AC006277.1-201ENST00000624348 1610 ntBASIC18.27■□□□□ 0.51
SIX2Q9NPC8 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.27■□□□□ 0.51
SIX2Q9NPC8 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 AC073621.1-201ENST00000392730 636 ntBASIC18.26■□□□□ 0.51
SIX2Q9NPC8 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 SLC25A6P2-201ENST00000497974 877 ntBASIC18.26■□□□□ 0.51
SIX2Q9NPC8 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 AL805961.1-202ENST00000641562 540 ntBASIC18.26■□□□□ 0.51
SIX2Q9NPC8 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms