Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 RARRES2P9-201ENST00000565168 469 ntBASIC16.67■□□□□ 0.26
VPS13AQ96RL7 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 CDC14C-201ENST00000428251 1719 ntBASIC16.66■□□□□ 0.26
VPS13AQ96RL7 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 AC142381.1-201ENST00000426099 345 ntBASIC16.66■□□□□ 0.26
VPS13AQ96RL7 CROCCP4-201ENST00000457096 498 ntBASIC16.66■□□□□ 0.26
VPS13AQ96RL7 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 SLC22A20-204ENST00000530038 1673 ntBASIC16.66■□□□□ 0.26
VPS13AQ96RL7 WIZP1-201ENST00000531444 2299 ntBASIC16.66■□□□□ 0.26
VPS13AQ96RL7 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 AC087289.5-201ENST00000586076 3175 ntBASIC16.66■□□□□ 0.26
VPS13AQ96RL7 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 DUTP2-201ENST00000519164 463 ntBASIC16.66■□□□□ 0.26
VPS13AQ96RL7 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 TMEM261P1-201ENST00000604899 340 ntBASIC16.66■□□□□ 0.26
VPS13AQ96RL7 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13AQ96RL7 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 AC098850.1-201ENST00000419919 790 ntBASIC16.65■□□□□ 0.26
VPS13AQ96RL7 AC105233.2-201ENST00000523697 349 ntBASIC16.65■□□□□ 0.26
VPS13AQ96RL7 AF228730.5-201ENST00000530288 346 ntBASIC16.65■□□□□ 0.26
VPS13AQ96RL7 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 AC018665.1-201ENST00000622927 1362 ntBASIC16.65■□□□□ 0.26
VPS13AQ96RL7 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.65■□□□□ 0.26
VPS13AQ96RL7 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 CSF2RBP1-201ENST00000447905 391 ntBASIC16.65■□□□□ 0.26
VPS13AQ96RL7 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS13AQ96RL7 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
VPS13AQ96RL7 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
VPS13AQ96RL7 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
VPS13AQ96RL7 AC106820.2-201ENST00000563775 3264 ntBASIC16.64■□□□□ 0.25
VPS13AQ96RL7 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 AL021578.1-201ENST00000613646 709 ntBASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms