Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SRP54P61011 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.86■□□□□ 0.29
SRP54P61011 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
SRP54P61011 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SRP54P61011 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SRP54P61011 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.85■□□□□ 0.29
SRP54P61011 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
SRP54P61011 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 FAM185BP-201ENST00000443595 716 ntBASIC16.85■□□□□ 0.29
SRP54P61011 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.85■□□□□ 0.29
SRP54P61011 ALG1L5P-201ENST00000482043 771 ntBASIC16.85■□□□□ 0.29
SRP54P61011 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.85■□□□□ 0.29
SRP54P61011 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.85■□□□□ 0.29
SRP54P61011 AP001160.2-201ENST00000596071 487 ntBASIC16.85■□□□□ 0.29
SRP54P61011 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.85■□□□□ 0.29
SRP54P61011 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SRP54P61011 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SRP54P61011 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.85■□□□□ 0.29
SRP54P61011 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
SRP54P61011 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.85■□□□□ 0.29
SRP54P61011 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SRP54P61011 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.84■□□□□ 0.29
SRP54P61011 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SRP54P61011 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
SRP54P61011 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SRP54P61011 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SRP54P61011 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.84■□□□□ 0.29
SRP54P61011 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SRP54P61011 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SRP54P61011 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SRP54P61011 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SRP54P61011 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SRP54P61011 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SRP54P61011 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.84■□□□□ 0.29
SRP54P61011 HTR5BP-201ENST00000430851 1154 ntBASIC16.84■□□□□ 0.29
SRP54P61011 AC074386.1-202ENST00000463561 864 ntBASIC16.84■□□□□ 0.29
SRP54P61011 SLC25A6P2-201ENST00000497974 877 ntBASIC16.84■□□□□ 0.29
SRP54P61011 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.84■□□□□ 0.29
SRP54P61011 MIR4469-201ENST00000583919 79 ntBASIC16.84■□□□□ 0.29
SRP54P61011 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.84■□□□□ 0.29
SRP54P61011 AL078644.1-201ENST00000609881 752 ntBASIC16.84■□□□□ 0.29
SRP54P61011 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SRP54P61011 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.84■□□□□ 0.29
SRP54P61011 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SRP54P61011 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.84■□□□□ 0.29
SRP54P61011 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SRP54P61011 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.84■□□□□ 0.29
SRP54P61011 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SRP54P61011 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
SRP54P61011 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SRP54P61011 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
SRP54P61011 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SRP54P61011 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SRP54P61011 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SRP54P61011 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SRP54P61011 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SRP54P61011 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.83■□□□□ 0.28
SRP54P61011 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.83■□□□□ 0.28
SRP54P61011 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.83■□□□□ 0.28
SRP54P61011 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
SRP54P61011 MKNK2P1-201ENST00000437526 628 ntBASIC16.83■□□□□ 0.28
SRP54P61011 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.83■□□□□ 0.28
SRP54P61011 AL513480.1-201ENST00000451731 511 ntBASIC16.83■□□□□ 0.28
SRP54P61011 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SRP54P61011 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.83■□□□□ 0.28
SRP54P61011 YBX1P5-201ENST00000509441 847 ntBASIC16.83■□□□□ 0.28
SRP54P61011 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.83■□□□□ 0.28
SRP54P61011 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.83■□□□□ 0.28
SRP54P61011 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.83■□□□□ 0.28
SRP54P61011 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.83■□□□□ 0.28
SRP54P61011 AC129492.6-201ENST00000611383 1305 ntBASIC16.83■□□□□ 0.28
SRP54P61011 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
SRP54P61011 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SRP54P61011 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SRP54P61011 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SRP54P61011 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SRP54P61011 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SRP54P61011 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.82■□□□□ 0.28
SRP54P61011 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
SRP54P61011 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SRP54P61011 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SRP54P61011 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.82■□□□□ 0.28
SRP54P61011 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SRP54P61011 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms