Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SCN4AP35499 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SCN4AP35499 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC19.86■□□□□ 0.77
SCN4AP35499 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SCN4AP35499 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC19.86■□□□□ 0.77
SCN4AP35499 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC19.86■□□□□ 0.77
SCN4AP35499 ACTBP11-201ENST00000436287 1126 ntBASIC19.86■□□□□ 0.77
SCN4AP35499 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SCN4AP35499 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SCN4AP35499 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC19.86■□□□□ 0.77
SCN4AP35499 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC19.86■□□□□ 0.77
SCN4AP35499 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
SCN4AP35499 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SCN4AP35499 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SCN4AP35499 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SCN4AP35499 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
SCN4AP35499 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SCN4AP35499 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SCN4AP35499 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC19.85■□□□□ 0.77
SCN4AP35499 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SCN4AP35499 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SCN4AP35499 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.85■□□□□ 0.77
SCN4AP35499 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SCN4AP35499 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.85■□□□□ 0.77
SCN4AP35499 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SCN4AP35499 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SCN4AP35499 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC19.85■□□□□ 0.77
SCN4AP35499 APOC3-202ENST00000375345 604 ntTSL 5 BASIC19.85■□□□□ 0.77
SCN4AP35499 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.85■□□□□ 0.77
SCN4AP35499 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC19.85■□□□□ 0.77
SCN4AP35499 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SCN4AP35499 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
SCN4AP35499 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC19.85■□□□□ 0.77
SCN4AP35499 MAX-210ENST00000555419 765 ntTSL 5 BASIC19.85■□□□□ 0.77
SCN4AP35499 AC093726.1-201ENST00000608064 963 ntBASIC19.85■□□□□ 0.77
SCN4AP35499 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.85■□□□□ 0.77
SCN4AP35499 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SCN4AP35499 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SCN4AP35499 TUBB1P2-201ENST00000422712 1306 ntBASIC19.85■□□□□ 0.77
SCN4AP35499 TUBB1P1-201ENST00000503144 1300 ntBASIC19.85■□□□□ 0.77
SCN4AP35499 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SCN4AP35499 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.84■□□□□ 0.77
SCN4AP35499 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
SCN4AP35499 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC19.84■□□□□ 0.77
SCN4AP35499 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 CROCCP4-201ENST00000457096 498 ntBASIC19.84■□□□□ 0.77
SCN4AP35499 TMEM261P1-201ENST00000604899 340 ntBASIC19.84■□□□□ 0.77
SCN4AP35499 AC004461.2-201ENST00000629517 803 ntBASIC19.84■□□□□ 0.77
SCN4AP35499 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.84■□□□□ 0.77
SCN4AP35499 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SCN4AP35499 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SCN4AP35499 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.84■□□□□ 0.77
SCN4AP35499 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SCN4AP35499 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SCN4AP35499 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC19.83■□□□□ 0.77
SCN4AP35499 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC19.83■□□□□ 0.77
SCN4AP35499 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC19.83■□□□□ 0.77
SCN4AP35499 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC19.83■□□□□ 0.77
SCN4AP35499 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC19.83■□□□□ 0.77
SCN4AP35499 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC19.83■□□□□ 0.77
SCN4AP35499 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SCN4AP35499 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC19.83■□□□□ 0.77
SCN4AP35499 SERBP1P3-201ENST00000459980 809 ntBASIC19.83■□□□□ 0.77
SCN4AP35499 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC19.83■□□□□ 0.77
SCN4AP35499 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
SCN4AP35499 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC19.83■□□□□ 0.77
SCN4AP35499 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC19.83■□□□□ 0.77
SCN4AP35499 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.83■□□□□ 0.77
SCN4AP35499 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SCN4AP35499 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.83■□□□□ 0.77
SCN4AP35499 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SCN4AP35499 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
SCN4AP35499 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
SCN4AP35499 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SCN4AP35499 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC19.83■□□□□ 0.76
SCN4AP35499 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC19.83■□□□□ 0.76
SCN4AP35499 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC19.83■□□□□ 0.76
SCN4AP35499 RN7SL219P-201ENST00000582872 296 ntBASIC19.83■□□□□ 0.76
SCN4AP35499 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC19.83■□□□□ 0.76
SCN4AP35499 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.83■□□□□ 0.76
SCN4AP35499 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.76
SCN4AP35499 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.83■□□□□ 0.76
SCN4AP35499 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SCN4AP35499 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.83■□□□□ 0.76
SCN4AP35499 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SCN4AP35499 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms