Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.68■□□□□ 0.58
COL6A1P12109 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
COL6A1P12109 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A1P12109 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A1P12109 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.68■□□□□ 0.58
COL6A1P12109 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A1P12109 AC104794.3-201ENST00000566840 1248 ntBASIC18.68■□□□□ 0.58
COL6A1P12109 AC106886.1-201ENST00000568660 600 ntBASIC18.68■□□□□ 0.58
COL6A1P12109 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A1P12109 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A1P12109 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.68■□□□□ 0.58
COL6A1P12109 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.68■□□□□ 0.58
COL6A1P12109 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC18.68■□□□□ 0.58
COL6A1P12109 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
COL6A1P12109 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A1P12109 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A1P12109 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A1P12109 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A1P12109 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
COL6A1P12109 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A1P12109 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
COL6A1P12109 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A1P12109 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL6A1P12109 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
COL6A1P12109 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL6A1P12109 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.67■□□□□ 0.58
COL6A1P12109 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL6A1P12109 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A1P12109 SLC22A20-204ENST00000530038 1673 ntBASIC18.67■□□□□ 0.58
COL6A1P12109 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A1P12109 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A1P12109 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A1P12109 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A1P12109 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A1P12109 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A1P12109 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.67■□□□□ 0.58
COL6A1P12109 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.67■□□□□ 0.58
COL6A1P12109 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A1P12109 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A1P12109 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.67■□□□□ 0.58
COL6A1P12109 TEX28P1-201ENST00000613479 1221 ntBASIC18.67■□□□□ 0.58
COL6A1P12109 TEX28P2-201ENST00000617764 1221 ntBASIC18.67■□□□□ 0.58
COL6A1P12109 AC004840.1-201ENST00000636359 365 ntBASIC18.67■□□□□ 0.58
COL6A1P12109 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
COL6A1P12109 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
COL6A1P12109 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A1P12109 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A1P12109 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
COL6A1P12109 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
COL6A1P12109 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL6A1P12109 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A1P12109 AL512384.1-201ENST00000406683 331 ntBASIC18.66■□□□□ 0.58
COL6A1P12109 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL6A1P12109 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A1P12109 AC105233.2-201ENST00000523697 349 ntBASIC18.66■□□□□ 0.58
COL6A1P12109 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.66■□□□□ 0.58
COL6A1P12109 AF228730.5-201ENST00000530288 346 ntBASIC18.66■□□□□ 0.58
COL6A1P12109 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
COL6A1P12109 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A1P12109 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A1P12109 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 AC073389.1-201ENST00000595595 795 ntBASIC18.66■□□□□ 0.58
COL6A1P12109 MIR6805-201ENST00000615055 62 ntBASIC18.66■□□□□ 0.58
COL6A1P12109 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL6A1P12109 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A1P12109 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A1P12109 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL6A1P12109 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A1P12109 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A1P12109 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
COL6A1P12109 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms