Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
CNTN3Q9P232 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CNTN3Q9P232 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CNTN3Q9P232 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 AC004967.1-201ENST00000453589 447 ntBASIC18.32■□□□□ 0.52
CNTN3Q9P232 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 AP002472.1-201ENST00000577490 586 ntBASIC18.32■□□□□ 0.52
CNTN3Q9P232 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 AC134684.3-201ENST00000641758 218 ntBASIC18.32■□□□□ 0.52
CNTN3Q9P232 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 AL353732.1-201ENST00000569618 1459 ntBASIC18.32■□□□□ 0.52
CNTN3Q9P232 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.32■□□□□ 0.52
CNTN3Q9P232 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CNTN3Q9P232 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 AC092919.2-201ENST00000623631 1645 ntBASIC18.31■□□□□ 0.52
CNTN3Q9P232 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.31■□□□□ 0.52
CNTN3Q9P232 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 AL031432.2-201ENST00000566714 459 ntBASIC18.31■□□□□ 0.52
CNTN3Q9P232 AL928711.1-201ENST00000570165 459 ntBASIC18.31■□□□□ 0.52
CNTN3Q9P232 MIR4469-201ENST00000583919 79 ntBASIC18.31■□□□□ 0.52
CNTN3Q9P232 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.31■□□□□ 0.52
CNTN3Q9P232 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.31■□□□□ 0.52
CNTN3Q9P232 AC091812.2-201ENST00000619081 385 ntBASIC18.31■□□□□ 0.52
CNTN3Q9P232 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.31■□□□□ 0.52
CNTN3Q9P232 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.31■□□□□ 0.52
CNTN3Q9P232 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 ELL2P1-201ENST00000413990 1906 ntBASIC18.31■□□□□ 0.52
CNTN3Q9P232 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CNTN3Q9P232 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CNTN3Q9P232 AL023806.1-201ENST00000603994 1649 ntBASIC18.31■□□□□ 0.52
CNTN3Q9P232 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CNTN3Q9P232 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CNTN3Q9P232 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CNTN3Q9P232 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
CNTN3Q9P232 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CNTN3Q9P232 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CNTN3Q9P232 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CNTN3Q9P232 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CNTN3Q9P232 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CNTN3Q9P232 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CNTN3Q9P232 AC108860.2-201ENST00000562760 2183 ntBASIC18.3■□□□□ 0.52
CNTN3Q9P232 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.3■□□□□ 0.52
CNTN3Q9P232 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.3■□□□□ 0.52
CNTN3Q9P232 FAM58CP-201ENST00000435741 640 ntBASIC18.3■□□□□ 0.52
CNTN3Q9P232 AP006288.1-201ENST00000446065 395 ntBASIC18.3■□□□□ 0.52
CNTN3Q9P232 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.3■□□□□ 0.52
CNTN3Q9P232 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.3■□□□□ 0.52
CNTN3Q9P232 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.3■□□□□ 0.52
CNTN3Q9P232 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.3■□□□□ 0.52
CNTN3Q9P232 AC091167.2-201ENST00000579581 588 ntBASIC18.3■□□□□ 0.52
CNTN3Q9P232 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CNTN3Q9P232 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.3■□□□□ 0.52
CNTN3Q9P232 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CNTN3Q9P232 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.3■□□□□ 0.52
CNTN3Q9P232 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CNTN3Q9P232 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.3■□□□□ 0.52
CNTN3Q9P232 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms