Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 MIR3197-201ENST00000582241 73 ntBASIC17.52■□□□□ 0.4
TDP1Q9NUW8 AC011467.4-201ENST00000594891 528 ntBASIC17.52■□□□□ 0.4
TDP1Q9NUW8 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
TDP1Q9NUW8 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TDP1Q9NUW8 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.52■□□□□ 0.39
TDP1Q9NUW8 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TDP1Q9NUW8 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TDP1Q9NUW8 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TDP1Q9NUW8 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 AC134043.2-201ENST00000624206 2238 ntBASIC17.51■□□□□ 0.39
TDP1Q9NUW8 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.51■□□□□ 0.39
TDP1Q9NUW8 AC092474.2-201ENST00000424288 719 ntBASIC17.51■□□□□ 0.39
TDP1Q9NUW8 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 AC091167.2-201ENST00000579581 588 ntBASIC17.51■□□□□ 0.39
TDP1Q9NUW8 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TDP1Q9NUW8 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 AL138688.1-201ENST00000624851 1594 ntBASIC17.5■□□□□ 0.39
TDP1Q9NUW8 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 SLC25A1P3-201ENST00000395415 828 ntBASIC17.5■□□□□ 0.39
TDP1Q9NUW8 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 KRT18P32-201ENST00000424695 1287 ntBASIC17.5■□□□□ 0.39
TDP1Q9NUW8 FAM86GP-201ENST00000448322 971 ntBASIC17.5■□□□□ 0.39
TDP1Q9NUW8 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.5■□□□□ 0.39
TDP1Q9NUW8 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TDP1Q9NUW8 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 SLC22A20-204ENST00000530038 1673 ntBASIC17.49■□□□□ 0.39
TDP1Q9NUW8 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.49■□□□□ 0.39
TDP1Q9NUW8 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 AC069335.1-201ENST00000489972 472 ntBASIC17.49■□□□□ 0.39
TDP1Q9NUW8 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.49■□□□□ 0.39
TDP1Q9NUW8 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.49■□□□□ 0.39
TDP1Q9NUW8 AC015911.4-201ENST00000588022 1070 ntBASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms