Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 AC099398.1-201ENST00000567919 2776 ntBASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 AP000344.2-201ENST00000512987 629 ntBASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 AC009053.2-201ENST00000563701 2365 ntBASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 AC012313.1-201ENST00000593393 3059 ntBASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 AC106028.4-201ENST00000614509 607 ntBASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TM9SF3Q9HD45 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.08■□□□□ 0.33
TM9SF3Q9HD45 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
TM9SF3Q9HD45 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
TM9SF3Q9HD45 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TM9SF3Q9HD45 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.08■□□□□ 0.33
TM9SF3Q9HD45 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TM9SF3Q9HD45 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 AC092902.6-201ENST00000641783 218 ntBASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms