Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PKP4Q99569 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.66■□□□□ 0.26
PKP4Q99569 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.66■□□□□ 0.26
PKP4Q99569 AC012640.2-201ENST00000561606 901 ntBASIC16.66■□□□□ 0.26
PKP4Q99569 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.66■□□□□ 0.26
PKP4Q99569 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.66■□□□□ 0.26
PKP4Q99569 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.66■□□□□ 0.26
PKP4Q99569 FAM215A-202ENST00000632077 792 ntBASIC16.66■□□□□ 0.26
PKP4Q99569 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKP4Q99569 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKP4Q99569 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.66■□□□□ 0.26
PKP4Q99569 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKP4Q99569 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKP4Q99569 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
PKP4Q99569 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PKP4Q99569 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PKP4Q99569 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PKP4Q99569 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.65■□□□□ 0.26
PKP4Q99569 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.65■□□□□ 0.26
PKP4Q99569 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PKP4Q99569 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
PKP4Q99569 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.65■□□□□ 0.26
PKP4Q99569 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 AC073621.1-201ENST00000392730 636 ntBASIC16.65■□□□□ 0.26
PKP4Q99569 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.65■□□□□ 0.26
PKP4Q99569 AC009078.2-202ENST00000463353 338 ntBASIC16.65■□□□□ 0.26
PKP4Q99569 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.65■□□□□ 0.26
PKP4Q99569 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.65■□□□□ 0.26
PKP4Q99569 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.65■□□□□ 0.26
PKP4Q99569 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.65■□□□□ 0.26
PKP4Q99569 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.65■□□□□ 0.26
PKP4Q99569 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.65■□□□□ 0.26
PKP4Q99569 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.65■□□□□ 0.26
PKP4Q99569 AL773604.1-201ENST00000617417 272 ntBASIC16.65■□□□□ 0.26
PKP4Q99569 AC008735.5-201ENST00000623544 497 ntBASIC16.65■□□□□ 0.26
PKP4Q99569 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.65■□□□□ 0.26
PKP4Q99569 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
PKP4Q99569 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.65■□□□□ 0.26
PKP4Q99569 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PKP4Q99569 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
PKP4Q99569 AC243591.1-201ENST00000452967 1364 ntBASIC16.64■□□□□ 0.26
PKP4Q99569 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PKP4Q99569 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.64■□□□□ 0.25
PKP4Q99569 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.64■□□□□ 0.25
PKP4Q99569 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
PKP4Q99569 AC099398.1-201ENST00000567919 2776 ntBASIC16.64■□□□□ 0.25
PKP4Q99569 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 RPS2P28-201ENST00000314255 741 ntBASIC16.64■□□□□ 0.25
PKP4Q99569 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.64■□□□□ 0.25
PKP4Q99569 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.64■□□□□ 0.25
PKP4Q99569 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.64■□□□□ 0.25
PKP4Q99569 AP002414.1-201ENST00000391405 1147 ntBASIC16.64■□□□□ 0.25
PKP4Q99569 AL031284.1-201ENST00000419297 478 ntBASIC16.64■□□□□ 0.25
PKP4Q99569 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.64■□□□□ 0.25
PKP4Q99569 AC105339.3-201ENST00000560043 636 ntBASIC16.64■□□□□ 0.25
PKP4Q99569 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.64■□□□□ 0.25
PKP4Q99569 AL049840.3-201ENST00000602669 611 ntBASIC16.64■□□□□ 0.25
PKP4Q99569 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.64■□□□□ 0.25
PKP4Q99569 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.64■□□□□ 0.25
PKP4Q99569 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PKP4Q99569 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.64■□□□□ 0.25
PKP4Q99569 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PKP4Q99569 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
PKP4Q99569 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKP4Q99569 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKP4Q99569 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.63■□□□□ 0.25
PKP4Q99569 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
PKP4Q99569 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKP4Q99569 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
PKP4Q99569 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PKP4Q99569 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PKP4Q99569 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms