Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
ALMS1Q8TCU4 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC11.33□□□□□ -0.59
ALMS1Q8TCU4 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 AL589987.1-201ENST00000453380 819 ntBASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 AL035456.1-201ENST00000456064 1369 ntBASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 AL512361.1-201ENST00000554200 418 ntBASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 APOC4-201ENST00000591600 348 ntTSL 3 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 TECR-220ENST00000600083 1204 ntTSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
ALMS1Q8TCU4 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 MIR1908-201ENST00000410394 80 ntBASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 AC123567.1-201ENST00000548294 1261 ntBASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 HLA-DPB2-205ENST00000435074 1188 ntBASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 ACTBP11-201ENST00000436287 1126 ntBASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 AC093726.1-201ENST00000608064 963 ntBASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 AC011495.1-201ENST00000498085 584 ntBASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
ALMS1Q8TCU4 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC11.32□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms