Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 GPR89P-201ENST00000407924 1495 ntBASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AL031598.1-201ENST00000561511 1773 ntBASIC5.31□□□□□ -1.56
SYNE1Q8NF91 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 SNCG-201ENST00000348795 684 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AL139288.1-201ENST00000623748 933 ntBASIC5.31□□□□□ -1.56
SYNE1Q8NF91 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 HARS-201ENST00000307633 1780 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AC132872.4-202ENST00000622924 2756 ntBASIC5.31□□□□□ -1.56
SYNE1Q8NF91 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AC073592.4-201ENST00000623827 446 ntBASIC5.31□□□□□ -1.56
SYNE1Q8NF91 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 FAM8A3P-201ENST00000427218 844 ntBASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AC019129.2-201ENST00000609837 1235 ntBASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AL096828.2-201ENST00000567259 1965 ntBASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 SDCCAG3P1-201ENST00000589292 1150 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms