Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.27■□□□□ 0.52
CTC1Q2NKJ3 AC026120.1-201ENST00000611536 926 ntBASIC18.27■□□□□ 0.52
CTC1Q2NKJ3 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.27■□□□□ 0.52
CTC1Q2NKJ3 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.27■□□□□ 0.52
CTC1Q2NKJ3 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CTC1Q2NKJ3 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CTC1Q2NKJ3 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CTC1Q2NKJ3 AC141586.5-201ENST00000624546 2050 ntBASIC18.27■□□□□ 0.51
CTC1Q2NKJ3 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTC1Q2NKJ3 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTC1Q2NKJ3 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTC1Q2NKJ3 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
CTC1Q2NKJ3 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTC1Q2NKJ3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 BASP1P1-201ENST00000430708 665 ntBASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 GAPDHP21-201ENST00000450301 1010 ntBASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 TIMM8BP1-201ENST00000452384 211 ntBASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 ACTL9-202ENST00000612068 1252 ntBASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTC1Q2NKJ3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 PP12613-201ENST00000424958 2230 ntBASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 AC002056.1-201ENST00000395613 760 ntBASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 GSAP-205ENST00000430584 600 ntTSL 5 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 CNN2P2-201ENST00000443536 909 ntBASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 CNN2P3-201ENST00000450201 906 ntBASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 AL136317.3-201ENST00000618497 906 ntBASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.25■□□□□ 0.51
CTC1Q2NKJ3 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.24■□□□□ 0.51
CTC1Q2NKJ3 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.24■□□□□ 0.51
CTC1Q2NKJ3 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTC1Q2NKJ3 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTC1Q2NKJ3 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CTC1Q2NKJ3 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTC1Q2NKJ3 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTC1Q2NKJ3 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CTC1Q2NKJ3 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTC1Q2NKJ3 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTC1Q2NKJ3 AL355306.1-201ENST00000415580 579 ntBASIC18.24■□□□□ 0.51
CTC1Q2NKJ3 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms