Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LIM2P55344 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.24■□□□□ 0.19
LIM2P55344 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
LIM2P55344 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
LIM2P55344 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.23■□□□□ 0.19
LIM2P55344 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LIM2P55344 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.23■□□□□ 0.19
LIM2P55344 AC092053.1-201ENST00000605787 1936 ntBASIC16.23■□□□□ 0.19
LIM2P55344 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LIM2P55344 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 AL118508.1-201ENST00000613502 2345 ntBASIC16.23■□□□□ 0.19
LIM2P55344 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.23■□□□□ 0.19
LIM2P55344 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.23■□□□□ 0.19
LIM2P55344 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.23■□□□□ 0.19
LIM2P55344 AC073621.1-201ENST00000392730 636 ntBASIC16.23■□□□□ 0.19
LIM2P55344 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.23■□□□□ 0.19
LIM2P55344 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.23■□□□□ 0.19
LIM2P55344 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.23■□□□□ 0.19
LIM2P55344 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.23■□□□□ 0.19
LIM2P55344 AC105339.3-201ENST00000560043 636 ntBASIC16.23■□□□□ 0.19
LIM2P55344 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.23■□□□□ 0.19
LIM2P55344 AL049840.3-201ENST00000602669 611 ntBASIC16.23■□□□□ 0.19
LIM2P55344 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.23■□□□□ 0.19
LIM2P55344 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.23■□□□□ 0.19
LIM2P55344 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.23■□□□□ 0.19
LIM2P55344 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.23■□□□□ 0.19
LIM2P55344 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.23■□□□□ 0.19
LIM2P55344 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.23■□□□□ 0.19
LIM2P55344 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIM2P55344 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.22■□□□□ 0.19
LIM2P55344 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIM2P55344 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIM2P55344 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.22■□□□□ 0.19
LIM2P55344 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIM2P55344 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
LIM2P55344 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.22■□□□□ 0.19
LIM2P55344 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIM2P55344 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.22■□□□□ 0.19
LIM2P55344 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIM2P55344 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
LIM2P55344 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIM2P55344 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.22■□□□□ 0.19
LIM2P55344 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
LIM2P55344 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.22■□□□□ 0.19
LIM2P55344 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIM2P55344 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.22■□□□□ 0.19
LIM2P55344 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.22■□□□□ 0.19
LIM2P55344 RNA5SP419-201ENST00000515908 135 ntBASIC16.22■□□□□ 0.19
LIM2P55344 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.22■□□□□ 0.19
LIM2P55344 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LIM2P55344 AP001005.1-201ENST00000571755 1248 ntBASIC16.22■□□□□ 0.19
LIM2P55344 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.22■□□□□ 0.19
LIM2P55344 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.22■□□□□ 0.19
LIM2P55344 MIR7706-201ENST00000613747 67 ntBASIC16.22■□□□□ 0.19
LIM2P55344 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.22■□□□□ 0.19
LIM2P55344 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.22■□□□□ 0.19
LIM2P55344 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIM2P55344 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.22■□□□□ 0.19
LIM2P55344 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIM2P55344 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIM2P55344 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.22■□□□□ 0.19
LIM2P55344 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIM2P55344 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIM2P55344 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIM2P55344 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.21■□□□□ 0.19
LIM2P55344 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIM2P55344 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
LIM2P55344 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
LIM2P55344 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
LIM2P55344 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIM2P55344 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.21■□□□□ 0.19
LIM2P55344 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.21■□□□□ 0.19
LIM2P55344 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIM2P55344 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIM2P55344 PTCHD3P3-201ENST00000403073 906 ntBASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms