Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX1P48742 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LHX1P48742 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LHX1P48742 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX1P48742 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX1P48742 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
LHX1P48742 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.06■□□□□ 0.48
LHX1P48742 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LHX1P48742 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX1P48742 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX1P48742 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.06■□□□□ 0.48
LHX1P48742 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.06■□□□□ 0.48
LHX1P48742 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX1P48742 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
LHX1P48742 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.05■□□□□ 0.48
LHX1P48742 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LHX1P48742 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.05■□□□□ 0.48
LHX1P48742 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
LHX1P48742 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.05■□□□□ 0.48
LHX1P48742 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
LHX1P48742 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.05■□□□□ 0.48
LHX1P48742 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.05■□□□□ 0.48
LHX1P48742 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.05■□□□□ 0.48
LHX1P48742 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.05■□□□□ 0.48
LHX1P48742 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.05■□□□□ 0.48
LHX1P48742 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.05■□□□□ 0.48
LHX1P48742 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.05■□□□□ 0.48
LHX1P48742 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.05■□□□□ 0.48
LHX1P48742 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.05■□□□□ 0.48
LHX1P48742 MIR4515-201ENST00000584082 81 ntBASIC18.05■□□□□ 0.48
LHX1P48742 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.05■□□□□ 0.48
LHX1P48742 C20orf181-201ENST00000623918 480 ntBASIC18.05■□□□□ 0.48
LHX1P48742 AL353732.1-201ENST00000569618 1459 ntBASIC18.05■□□□□ 0.48
LHX1P48742 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.05■□□□□ 0.48
LHX1P48742 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
LHX1P48742 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LHX1P48742 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 KRT8P49-201ENST00000604166 1432 ntBASIC18.05■□□□□ 0.48
LHX1P48742 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LHX1P48742 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.05■□□□□ 0.48
LHX1P48742 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.04■□□□□ 0.48
LHX1P48742 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LHX1P48742 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.04■□□□□ 0.48
LHX1P48742 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.04■□□□□ 0.48
LHX1P48742 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.04■□□□□ 0.48
LHX1P48742 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.04■□□□□ 0.48
LHX1P48742 AL031432.2-201ENST00000566714 459 ntBASIC18.04■□□□□ 0.48
LHX1P48742 AC005829.1-201ENST00000570002 483 ntBASIC18.04■□□□□ 0.48
LHX1P48742 AL928711.1-201ENST00000570165 459 ntBASIC18.04■□□□□ 0.48
LHX1P48742 AC091167.2-201ENST00000579581 588 ntBASIC18.04■□□□□ 0.48
LHX1P48742 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.04■□□□□ 0.48
LHX1P48742 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.04■□□□□ 0.48
LHX1P48742 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.04■□□□□ 0.48
LHX1P48742 AC139530.3-201ENST00000620344 690 ntBASIC18.04■□□□□ 0.48
LHX1P48742 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.04■□□□□ 0.48
LHX1P48742 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.04■□□□□ 0.48
LHX1P48742 PCDHB18P-201ENST00000524813 2368 ntBASIC18.04■□□□□ 0.48
LHX1P48742 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LHX1P48742 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
LHX1P48742 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LHX1P48742 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
LHX1P48742 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LHX1P48742 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
LHX1P48742 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.03■□□□□ 0.48
LHX1P48742 AC139713.2-201ENST00000641328 2723 ntBASIC18.03■□□□□ 0.48
LHX1P48742 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
LHX1P48742 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.03■□□□□ 0.48
LHX1P48742 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LHX1P48742 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LHX1P48742 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.03■□□□□ 0.48
LHX1P48742 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.03■□□□□ 0.48
LHX1P48742 MKNK2P1-201ENST00000437526 628 ntBASIC18.03■□□□□ 0.48
LHX1P48742 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.03■□□□□ 0.48
LHX1P48742 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
LHX1P48742 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms