Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AL512384.1-201ENST00000406683 331 ntBASIC20.23■□□□□ 0.83
COL4A5P29400 TMEM14DP-201ENST00000422205 345 ntBASIC20.23■□□□□ 0.83
COL4A5P29400 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A5P29400 RPS2P32-201ENST00000439199 892 ntBASIC20.23■□□□□ 0.83
COL4A5P29400 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.23■□□□□ 0.83
COL4A5P29400 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.23■□□□□ 0.83
COL4A5P29400 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.23■□□□□ 0.83
COL4A5P29400 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.23■□□□□ 0.83
COL4A5P29400 AC008494.3-201ENST00000606615 944 ntBASIC20.23■□□□□ 0.83
COL4A5P29400 RN7SL828P-201ENST00000607615 303 ntBASIC20.23■□□□□ 0.83
COL4A5P29400 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A5P29400 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
COL4A5P29400 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A5P29400 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A5P29400 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A5P29400 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A5P29400 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.23■□□□□ 0.83
COL4A5P29400 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
COL4A5P29400 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A5P29400 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL4A5P29400 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A5P29400 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A5P29400 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC20.23■□□□□ 0.83
COL4A5P29400 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 AC135586.1-201ENST00000539323 574 ntBASIC20.22■□□□□ 0.83
COL4A5P29400 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A5P29400 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A5P29400 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.22■□□□□ 0.83
COL4A5P29400 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A5P29400 AL035456.1-201ENST00000456064 1369 ntBASIC20.22■□□□□ 0.83
COL4A5P29400 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL4A5P29400 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.22■□□□□ 0.83
COL4A5P29400 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 AL353779.1-201ENST00000434793 351 ntBASIC20.22■□□□□ 0.83
COL4A5P29400 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL4A5P29400 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 AL589739.1-201ENST00000607720 493 ntBASIC20.22■□□□□ 0.83
COL4A5P29400 AC021097.1-201ENST00000607902 574 ntBASIC20.22■□□□□ 0.83
COL4A5P29400 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A5P29400 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL4A5P29400 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
COL4A5P29400 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A5P29400 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
COL4A5P29400 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A5P29400 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A5P29400 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
COL4A5P29400 FRMD8P1-201ENST00000440433 1524 ntBASIC20.21■□□□□ 0.83
COL4A5P29400 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A5P29400 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A5P29400 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
COL4A5P29400 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A5P29400 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A5P29400 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
COL4A5P29400 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A5P29400 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.21■□□□□ 0.83
COL4A5P29400 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A5P29400 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A5P29400 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.21■□□□□ 0.83
COL4A5P29400 AC007431.3-201ENST00000623221 587 ntBASIC20.21■□□□□ 0.83
COL4A5P29400 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A5P29400 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.21■□□□□ 0.83
COL4A5P29400 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A5P29400 AC073439.1-201ENST00000624121 1774 ntBASIC20.21■□□□□ 0.83
COL4A5P29400 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A5P29400 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A5P29400 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
COL4A5P29400 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A5P29400 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
COL4A5P29400 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A5P29400 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A5P29400 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC20.2■□□□□ 0.83
COL4A5P29400 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.83
COL4A5P29400 AC133963.1-201ENST00000504166 1679 ntBASIC20.2■□□□□ 0.82
COL4A5P29400 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A5P29400 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A5P29400 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A5P29400 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms