Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.54■□□□□ 0.72
SMARCA1P28370 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SMARCA1P28370 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMARCA1P28370 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC19.54■□□□□ 0.72
SMARCA1P28370 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMARCA1P28370 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.53■□□□□ 0.72
SMARCA1P28370 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.53■□□□□ 0.72
SMARCA1P28370 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SMARCA1P28370 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCA1P28370 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.53■□□□□ 0.72
SMARCA1P28370 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.53■□□□□ 0.72
SMARCA1P28370 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCA1P28370 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SMARCA1P28370 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCA1P28370 AC012569.1-201ENST00000591191 1524 ntBASIC19.53■□□□□ 0.72
SMARCA1P28370 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCA1P28370 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCA1P28370 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCA1P28370 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCA1P28370 AC074386.1-202ENST00000463561 864 ntBASIC19.53■□□□□ 0.72
SMARCA1P28370 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.53■□□□□ 0.72
SMARCA1P28370 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCA1P28370 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.53■□□□□ 0.72
SMARCA1P28370 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.53■□□□□ 0.72
SMARCA1P28370 AC087641.1-201ENST00000557561 1021 ntBASIC19.53■□□□□ 0.72
SMARCA1P28370 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.53■□□□□ 0.72
SMARCA1P28370 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.53■□□□□ 0.72
SMARCA1P28370 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC19.53■□□□□ 0.72
SMARCA1P28370 AL513190.1-201ENST00000621254 727 ntBASIC19.53■□□□□ 0.72
SMARCA1P28370 AP001350.2-201ENST00000625104 1094 ntBASIC19.53■□□□□ 0.72
SMARCA1P28370 AC006277.1-201ENST00000624348 1610 ntBASIC19.53■□□□□ 0.72
SMARCA1P28370 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SMARCA1P28370 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCA1P28370 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCA1P28370 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCA1P28370 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SMARCA1P28370 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMARCA1P28370 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.53■□□□□ 0.72
SMARCA1P28370 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCA1P28370 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCA1P28370 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCA1P28370 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCA1P28370 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCA1P28370 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.52■□□□□ 0.72
SMARCA1P28370 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCA1P28370 HMGA1P7-201ENST00000406908 502 ntBASIC19.52■□□□□ 0.72
SMARCA1P28370 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCA1P28370 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.52■□□□□ 0.72
SMARCA1P28370 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SMARCA1P28370 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
SMARCA1P28370 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.52■□□□□ 0.72
SMARCA1P28370 THTPA-204ENST00000554970 569 ntTSL 4 BASIC19.52■□□□□ 0.72
SMARCA1P28370 THTPA-206ENST00000556015 535 ntTSL 3 BASIC19.52■□□□□ 0.72
SMARCA1P28370 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SMARCA1P28370 MTDHP5-201ENST00000598980 586 ntBASIC19.52■□□□□ 0.72
SMARCA1P28370 AL139011.1-202ENST00000642063 584 ntBASIC19.52■□□□□ 0.72
SMARCA1P28370 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.52■□□□□ 0.72
SMARCA1P28370 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.52■□□□□ 0.72
SMARCA1P28370 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.52■□□□□ 0.72
SMARCA1P28370 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCA1P28370 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SMARCA1P28370 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.52■□□□□ 0.72
SMARCA1P28370 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMARCA1P28370 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.52■□□□□ 0.72
SMARCA1P28370 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SMARCA1P28370 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.52■□□□□ 0.72
SMARCA1P28370 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMARCA1P28370 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
SMARCA1P28370 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.52■□□□□ 0.71
SMARCA1P28370 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.52■□□□□ 0.71
SMARCA1P28370 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMARCA1P28370 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SMARCA1P28370 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMARCA1P28370 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.52■□□□□ 0.71
SMARCA1P28370 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMARCA1P28370 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.51■□□□□ 0.71
SMARCA1P28370 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
SMARCA1P28370 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SMARCA1P28370 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
SMARCA1P28370 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SMARCA1P28370 AC023274.1-201ENST00000418278 595 ntBASIC19.51■□□□□ 0.71
SMARCA1P28370 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
SMARCA1P28370 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.51■□□□□ 0.71
SMARCA1P28370 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.51■□□□□ 0.71
SMARCA1P28370 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.51■□□□□ 0.71
SMARCA1P28370 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.51■□□□□ 0.71
SMARCA1P28370 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms