Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP1O15259 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC21.52■■□□□ 1.03
NPHP1O15259 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.03
NPHP1O15259 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC21.51■■□□□ 1.03
NPHP1O15259 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
NPHP1O15259 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
NPHP1O15259 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 KRT18P55-202ENST00000578578 1546 ntBASIC21.51■■□□□ 1.03
NPHP1O15259 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
NPHP1O15259 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC21.51■■□□□ 1.03
NPHP1O15259 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC21.51■■□□□ 1.03
NPHP1O15259 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC21.51■■□□□ 1.03
NPHP1O15259 AL645728.2-201ENST00000641974 660 ntBASIC21.51■■□□□ 1.03
NPHP1O15259 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
NPHP1O15259 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.51■■□□□ 1.03
NPHP1O15259 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP1O15259 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC21.5■■□□□ 1.03
NPHP1O15259 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP1O15259 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC21.5■■□□□ 1.03
NPHP1O15259 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
NPHP1O15259 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
NPHP1O15259 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
NPHP1O15259 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 AC140658.5-201ENST00000438532 169 ntBASIC21.5■■□□□ 1.03
NPHP1O15259 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 TSFM-210ENST00000550559 897 ntTSL 5 BASIC21.5■■□□□ 1.03
NPHP1O15259 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP1O15259 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC21.5■■□□□ 1.03
NPHP1O15259 AJ011932.1-201ENST00000621707 465 ntBASIC21.5■■□□□ 1.03
NPHP1O15259 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP1O15259 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
NPHP1O15259 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.5■■□□□ 1.03
NPHP1O15259 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP1O15259 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP1O15259 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP1O15259 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHP1O15259 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHP1O15259 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP1O15259 TFAMP1-201ENST00000412727 736 ntBASIC21.49■■□□□ 1.03
NPHP1O15259 BASP1P1-201ENST00000430708 665 ntBASIC21.49■■□□□ 1.03
NPHP1O15259 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.49■■□□□ 1.03
NPHP1O15259 WBP2-203ENST00000433525 928 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHP1O15259 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP1O15259 AC079140.1-201ENST00000508039 487 ntBASIC21.49■■□□□ 1.03
NPHP1O15259 AC190387.1-201ENST00000551683 408 ntBASIC21.49■■□□□ 1.03
NPHP1O15259 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP1O15259 AC099522.2-201ENST00000607001 744 ntBASIC21.49■■□□□ 1.03
NPHP1O15259 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP1O15259 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP1O15259 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
NPHP1O15259 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP1O15259 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP1O15259 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP1O15259 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP1O15259 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP1O15259 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
NPHP1O15259 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP1O15259 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP1O15259 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP1O15259 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21.48■■□□□ 1.03
NPHP1O15259 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP1O15259 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP1O15259 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP1O15259 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP1O15259 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC21.48■■□□□ 1.03
NPHP1O15259 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP1O15259 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms