Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.31■□□□□ 0.52
FOXN3O00409 MTDHP4-201ENST00000600287 670 ntBASIC18.31■□□□□ 0.52
FOXN3O00409 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.31■□□□□ 0.52
FOXN3O00409 AL589182.2-201ENST00000619332 1049 ntBASIC18.31■□□□□ 0.52
FOXN3O00409 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.31■□□□□ 0.52
FOXN3O00409 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
FOXN3O00409 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
FOXN3O00409 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.3■□□□□ 0.52
FOXN3O00409 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
FOXN3O00409 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
FOXN3O00409 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
FOXN3O00409 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.3■□□□□ 0.52
FOXN3O00409 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
FOXN3O00409 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
FOXN3O00409 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.3■□□□□ 0.52
FOXN3O00409 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.3■□□□□ 0.52
FOXN3O00409 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXN3O00409 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.3■□□□□ 0.52
FOXN3O00409 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
FOXN3O00409 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
FOXN3O00409 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXN3O00409 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXN3O00409 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
FOXN3O00409 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.3■□□□□ 0.52
FOXN3O00409 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
FOXN3O00409 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
FOXN3O00409 AC243591.1-201ENST00000452967 1364 ntBASIC18.3■□□□□ 0.52
FOXN3O00409 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.29■□□□□ 0.52
FOXN3O00409 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.29■□□□□ 0.52
FOXN3O00409 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
FOXN3O00409 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
FOXN3O00409 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.29■□□□□ 0.52
FOXN3O00409 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.29■□□□□ 0.52
FOXN3O00409 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.29■□□□□ 0.52
FOXN3O00409 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.29■□□□□ 0.52
FOXN3O00409 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
FOXN3O00409 SAPCD2P3-201ENST00000455031 850 ntBASIC18.29■□□□□ 0.52
FOXN3O00409 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
FOXN3O00409 TERC-201ENST00000602385 541 ntBASIC18.29■□□□□ 0.52
FOXN3O00409 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.29■□□□□ 0.52
FOXN3O00409 AL139424.1-201ENST00000607572 797 ntBASIC18.29■□□□□ 0.52
FOXN3O00409 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
FOXN3O00409 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
FOXN3O00409 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.29■□□□□ 0.52
FOXN3O00409 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXN3O00409 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.29■□□□□ 0.52
FOXN3O00409 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXN3O00409 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
FOXN3O00409 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXN3O00409 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.28■□□□□ 0.52
FOXN3O00409 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
FOXN3O00409 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXN3O00409 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXN3O00409 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXN3O00409 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXN3O00409 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXN3O00409 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
FOXN3O00409 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXN3O00409 AC021087.4-201ENST00000563761 564 ntBASIC18.28■□□□□ 0.52
FOXN3O00409 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.28■□□□□ 0.52
FOXN3O00409 AC139887.3-201ENST00000568585 713 ntBASIC18.28■□□□□ 0.52
FOXN3O00409 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.28■□□□□ 0.52
FOXN3O00409 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
FOXN3O00409 LINC01711-201ENST00000598340 967 ntBASIC18.28■□□□□ 0.52
FOXN3O00409 AC025062.2-201ENST00000605477 670 ntBASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms