Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 MAX-217ENST00000557277 728 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 RGMA-211ENST00000557420 989 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 AC092368.3-202ENST00000574180 1591 ntBASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.37□□□□□ -0.11
CCDC28AQ8IWP9 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 REXO2-208ENST00000539754 791 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28AQ8IWP9 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 AC126335.2-201ENST00000623362 4637 ntBASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 ADM-208ENST00000534464 1640 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 TSPY23P-201ENST00000440136 739 ntBASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 GATS-209ENST00000454084 1030 ntTSL 3 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC14.35□□□□□ -0.11
CCDC28AQ8IWP9 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms