Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP54Q70EL1 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP54Q70EL1 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP54Q70EL1 HNRNPA1P40-201ENST00000426371 1278 ntBASIC22.49■■□□□ 1.19
USP54Q70EL1 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP54Q70EL1 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC22.49■■□□□ 1.19
USP54Q70EL1 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC22.49■■□□□ 1.19
USP54Q70EL1 AC018529.1-201ENST00000613063 361 ntBASIC22.49■■□□□ 1.19
USP54Q70EL1 GPER1-207ENST00000619052 571 ntTSL 2 BASIC22.49■■□□□ 1.19
USP54Q70EL1 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP54Q70EL1 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USP54Q70EL1 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC22.48■■□□□ 1.19
USP54Q70EL1 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USP54Q70EL1 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP54Q70EL1 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC22.48■■□□□ 1.19
USP54Q70EL1 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP54Q70EL1 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC22.48■■□□□ 1.19
USP54Q70EL1 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC22.48■■□□□ 1.19
USP54Q70EL1 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USP54Q70EL1 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC22.48■■□□□ 1.19
USP54Q70EL1 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USP54Q70EL1 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC22.48■■□□□ 1.19
USP54Q70EL1 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC22.48■■□□□ 1.19
USP54Q70EL1 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.19
USP54Q70EL1 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC22.48■■□□□ 1.19
USP54Q70EL1 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USP54Q70EL1 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
USP54Q70EL1 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
USP54Q70EL1 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
USP54Q70EL1 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
USP54Q70EL1 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP54Q70EL1 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP54Q70EL1 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
USP54Q70EL1 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
USP54Q70EL1 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC22.47■■□□□ 1.19
USP54Q70EL1 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC22.47■■□□□ 1.19
USP54Q70EL1 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC22.47■■□□□ 1.19
USP54Q70EL1 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
USP54Q70EL1 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
USP54Q70EL1 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC22.47■■□□□ 1.19
USP54Q70EL1 COX11-202ENST00000571584 1108 ntTSL 2 BASIC22.47■■□□□ 1.19
USP54Q70EL1 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC22.47■■□□□ 1.19
USP54Q70EL1 AL133215.2-201ENST00000609242 977 ntBASIC22.47■■□□□ 1.19
USP54Q70EL1 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP54Q70EL1 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
USP54Q70EL1 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
USP54Q70EL1 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 INGX-202ENST00000489074 768 ntBASIC22.46■■□□□ 1.19
USP54Q70EL1 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC22.46■■□□□ 1.19
USP54Q70EL1 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC22.46■■□□□ 1.19
USP54Q70EL1 AC009118.2-201ENST00000613275 655 ntBASIC22.46■■□□□ 1.19
USP54Q70EL1 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC22.46■■□□□ 1.19
USP54Q70EL1 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 GRAMD4P3-201ENST00000621665 1669 ntBASIC22.46■■□□□ 1.19
USP54Q70EL1 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC22.46■■□□□ 1.19
USP54Q70EL1 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC22.46■■□□□ 1.19
USP54Q70EL1 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC22.46■■□□□ 1.19
USP54Q70EL1 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
USP54Q70EL1 GOLGA6L11P-201ENST00000417252 1298 ntBASIC22.46■■□□□ 1.19
USP54Q70EL1 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC22.46■■□□□ 1.19
USP54Q70EL1 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC22.46■■□□□ 1.19
USP54Q70EL1 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC22.45■■□□□ 1.18
USP54Q70EL1 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
USP54Q70EL1 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC22.45■■□□□ 1.18
USP54Q70EL1 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC22.45■■□□□ 1.18
USP54Q70EL1 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
USP54Q70EL1 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
USP54Q70EL1 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
USP54Q70EL1 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC22.45■■□□□ 1.18
USP54Q70EL1 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC22.45■■□□□ 1.18
USP54Q70EL1 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
USP54Q70EL1 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
USP54Q70EL1 GRAP-202ENST00000395635 834 ntTSL 2 BASIC22.45■■□□□ 1.18
USP54Q70EL1 HLA-J-202ENST00000469281 1241 ntBASIC22.45■■□□□ 1.18
USP54Q70EL1 HLA-V-204ENST00000476601 1289 ntBASIC22.45■■□□□ 1.18
USP54Q70EL1 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC22.45■■□□□ 1.18
USP54Q70EL1 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
USP54Q70EL1 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC22.45■■□□□ 1.18
USP54Q70EL1 AC025048.6-201ENST00000634326 1161 ntBASIC22.45■■□□□ 1.18
USP54Q70EL1 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC22.45■■□□□ 1.18
USP54Q70EL1 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
USP54Q70EL1 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC22.45■■□□□ 1.18
USP54Q70EL1 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP54Q70EL1 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
USP54Q70EL1 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
USP54Q70EL1 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms