Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC093525.9-201ENST00000624961 1746 ntBASIC20.7■□□□□ 0.9
VPS53Q5VIR6 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS53Q5VIR6 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 AL031284.1-201ENST00000419297 478 ntBASIC20.69■□□□□ 0.9
VPS53Q5VIR6 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 OR7E14P-202ENST00000530490 1290 ntBASIC20.69■□□□□ 0.9
VPS53Q5VIR6 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 AL353135.1-201ENST00000606729 504 ntBASIC20.69■□□□□ 0.9
VPS53Q5VIR6 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 AL773604.1-201ENST00000617417 272 ntBASIC20.69■□□□□ 0.9
VPS53Q5VIR6 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS53Q5VIR6 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 AC006504.4-201ENST00000592118 1568 ntBASIC20.68■□□□□ 0.9
VPS53Q5VIR6 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 AL589182.2-201ENST00000619332 1049 ntBASIC20.68■□□□□ 0.9
VPS53Q5VIR6 AC004706.3-202ENST00000621574 984 ntBASIC20.68■□□□□ 0.9
VPS53Q5VIR6 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 AP002414.3-201ENST00000589352 1468 ntBASIC20.68■□□□□ 0.9
VPS53Q5VIR6 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS53Q5VIR6 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 AC073621.1-201ENST00000392730 636 ntBASIC20.67■□□□□ 0.9
VPS53Q5VIR6 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 ACTG1P4-201ENST00000425123 1122 ntBASIC20.67■□□□□ 0.9
VPS53Q5VIR6 KRT18P27-201ENST00000427733 1299 ntBASIC20.67■□□□□ 0.9
VPS53Q5VIR6 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 NCF1C-201ENST00000438382 1427 ntBASIC20.67■□□□□ 0.9
VPS53Q5VIR6 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VPS53Q5VIR6 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 ELK2BP-201ENST00000415014 1224 ntBASIC20.66■□□□□ 0.9
VPS53Q5VIR6 LAGE3P1-201ENST00000425356 484 ntBASIC20.66■□□□□ 0.9
VPS53Q5VIR6 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms