Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.98■□□□□ 0.63
HTTP42858 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.98■□□□□ 0.63
HTTP42858 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.98■□□□□ 0.63
HTTP42858 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.98■□□□□ 0.63
HTTP42858 ARL16-210ENST00000574938 751 ntTSL 2 BASIC18.98■□□□□ 0.63
HTTP42858 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC18.98■□□□□ 0.63
HTTP42858 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
HTTP42858 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
HTTP42858 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC18.98■□□□□ 0.63
HTTP42858 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.98■□□□□ 0.63
HTTP42858 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HTTP42858 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.98■□□□□ 0.63
HTTP42858 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.98■□□□□ 0.63
HTTP42858 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.98■□□□□ 0.63
HTTP42858 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
HTTP42858 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HTTP42858 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HTTP42858 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC18.97■□□□□ 0.63
HTTP42858 MIR1908-201ENST00000410394 80 ntBASIC18.97■□□□□ 0.63
HTTP42858 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HTTP42858 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
HTTP42858 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
HTTP42858 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
HTTP42858 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HTTP42858 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HTTP42858 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.97■□□□□ 0.63
HTTP42858 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HTTP42858 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.97■□□□□ 0.63
HTTP42858 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
HTTP42858 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
HTTP42858 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC18.97■□□□□ 0.63
HTTP42858 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC18.97■□□□□ 0.63
HTTP42858 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.97■□□□□ 0.63
HTTP42858 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.97■□□□□ 0.63
HTTP42858 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.97■□□□□ 0.63
HTTP42858 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.97■□□□□ 0.63
HTTP42858 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
HTTP42858 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
HTTP42858 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.96■□□□□ 0.63
HTTP42858 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HTTP42858 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC18.96■□□□□ 0.63
HTTP42858 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.96■□□□□ 0.63
HTTP42858 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HTTP42858 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HTTP42858 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HTTP42858 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
HTTP42858 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HTTP42858 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HTTP42858 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
HTTP42858 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC18.96■□□□□ 0.63
HTTP42858 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
HTTP42858 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HTTP42858 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.96■□□□□ 0.63
HTTP42858 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HTTP42858 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
HTTP42858 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
HTTP42858 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.96■□□□□ 0.63
HTTP42858 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC18.96■□□□□ 0.63
HTTP42858 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HTTP42858 TECR-220ENST00000600083 1204 ntTSL 2 BASIC18.96■□□□□ 0.63
HTTP42858 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.96■□□□□ 0.63
HTTP42858 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
HTTP42858 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.62
HTTP42858 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HTTP42858 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HTTP42858 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
HTTP42858 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.95■□□□□ 0.62
HTTP42858 AL353732.1-201ENST00000569618 1459 ntBASIC18.95■□□□□ 0.62
HTTP42858 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.95■□□□□ 0.62
HTTP42858 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.95■□□□□ 0.62
HTTP42858 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.95■□□□□ 0.62
HTTP42858 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HTTP42858 AC098850.1-201ENST00000419919 790 ntBASIC18.95■□□□□ 0.62
HTTP42858 AC234783.1-201ENST00000441761 496 ntBASIC18.95■□□□□ 0.62
HTTP42858 CROCCP4-201ENST00000457096 498 ntBASIC18.95■□□□□ 0.62
HTTP42858 AC244093.1-201ENST00000610837 814 ntBASIC18.95■□□□□ 0.62
HTTP42858 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HTTP42858 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HTTP42858 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
HTTP42858 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC18.95■□□□□ 0.62
HTTP42858 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC18.95■□□□□ 0.62
HTTP42858 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.95■□□□□ 0.62
HTTP42858 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HTTP42858 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.95■□□□□ 0.62
HTTP42858 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms