Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.18■□□□□ 0.18
SOX3P41225 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.17■□□□□ 0.18
SOX3P41225 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.17■□□□□ 0.18
SOX3P41225 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SOX3P41225 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.17■□□□□ 0.18
SOX3P41225 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
SOX3P41225 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SOX3P41225 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
SOX3P41225 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.17■□□□□ 0.18
SOX3P41225 AL031284.1-201ENST00000419297 478 ntBASIC16.17■□□□□ 0.18
SOX3P41225 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
SOX3P41225 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.17■□□□□ 0.18
SOX3P41225 AP001005.1-201ENST00000571755 1248 ntBASIC16.17■□□□□ 0.18
SOX3P41225 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.17■□□□□ 0.18
SOX3P41225 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.17■□□□□ 0.18
SOX3P41225 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.17■□□□□ 0.18
SOX3P41225 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.17■□□□□ 0.18
SOX3P41225 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
SOX3P41225 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.17■□□□□ 0.18
SOX3P41225 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SOX3P41225 AC132938.5-201ENST00000624980 1813 ntBASIC16.17■□□□□ 0.18
SOX3P41225 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.17■□□□□ 0.18
SOX3P41225 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX3P41225 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SOX3P41225 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.16■□□□□ 0.18
SOX3P41225 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SOX3P41225 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
SOX3P41225 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SOX3P41225 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.16■□□□□ 0.18
SOX3P41225 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 KLF4P1-201ENST00000412782 1185 ntBASIC16.16■□□□□ 0.18
SOX3P41225 SPDYE21P-201ENST00000413323 827 ntBASIC16.16■□□□□ 0.18
SOX3P41225 HNRNPDP1-201ENST00000439535 754 ntBASIC16.16■□□□□ 0.18
SOX3P41225 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 RNA5SP419-201ENST00000515908 135 ntBASIC16.16■□□□□ 0.18
SOX3P41225 IGHV3-52-201ENST00000519770 353 ntBASIC16.16■□□□□ 0.18
SOX3P41225 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.16■□□□□ 0.18
SOX3P41225 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.16■□□□□ 0.18
SOX3P41225 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.16■□□□□ 0.18
SOX3P41225 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.16■□□□□ 0.18
SOX3P41225 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.16■□□□□ 0.18
SOX3P41225 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 PCDH8P1-201ENST00000428983 2773 ntBASIC16.16■□□□□ 0.18
SOX3P41225 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 AL138688.1-201ENST00000624851 1594 ntBASIC16.16■□□□□ 0.18
SOX3P41225 AC004817.3-201ENST00000602957 2129 ntBASIC16.16■□□□□ 0.18
SOX3P41225 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.16■□□□□ 0.18
SOX3P41225 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX3P41225 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
SOX3P41225 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
SOX3P41225 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX3P41225 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX3P41225 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX3P41225 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SOX3P41225 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX3P41225 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SOX3P41225 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX3P41225 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.15■□□□□ 0.18
SOX3P41225 RPS2P1-201ENST00000434010 821 ntBASIC16.15■□□□□ 0.18
SOX3P41225 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.15■□□□□ 0.18
SOX3P41225 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX3P41225 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 MTDHP4-201ENST00000600287 670 ntBASIC16.15■□□□□ 0.18
SOX3P41225 AC025062.2-201ENST00000605477 670 ntBASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms