Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC21.27■■□□□ 1
COL5A3P25940 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL5A3P25940 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC21.27■■□□□ 1
COL5A3P25940 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC21.27■■□□□ 1
COL5A3P25940 AP001350.2-201ENST00000625104 1094 ntBASIC21.27■■□□□ 1
COL5A3P25940 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
COL5A3P25940 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
COL5A3P25940 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL5A3P25940 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.27■■□□□ 1
COL5A3P25940 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL5A3P25940 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL5A3P25940 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL5A3P25940 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL5A3P25940 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
COL5A3P25940 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL5A3P25940 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
COL5A3P25940 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
COL5A3P25940 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC21.27■□□□□ 0.99
COL5A3P25940 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
COL5A3P25940 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.27■□□□□ 0.99
COL5A3P25940 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL5A3P25940 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL5A3P25940 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
COL5A3P25940 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC21.26■□□□□ 0.99
COL5A3P25940 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC21.26■□□□□ 0.99
COL5A3P25940 HILS1-202ENST00000545329 423 ntBASIC21.26■□□□□ 0.99
COL5A3P25940 AC009407.1-201ENST00000568958 598 ntBASIC21.26■□□□□ 0.99
COL5A3P25940 ARL16-202ENST00000570561 768 ntTSL 2 BASIC21.26■□□□□ 0.99
COL5A3P25940 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC21.26■□□□□ 0.99
COL5A3P25940 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.26■□□□□ 0.99
COL5A3P25940 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC21.26■□□□□ 0.99
COL5A3P25940 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
COL5A3P25940 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 CENPM-206ENST00000407253 818 ntTSL 2 BASIC21.26■□□□□ 0.99
COL5A3P25940 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
COL5A3P25940 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC21.26■□□□□ 0.99
COL5A3P25940 SPDYE18-201ENST00000510091 1050 ntBASIC21.26■□□□□ 0.99
COL5A3P25940 IFT20-216ENST00000588477 774 ntTSL 5 BASIC21.26■□□□□ 0.99
COL5A3P25940 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A3P25940 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.26■□□□□ 0.99
COL5A3P25940 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
COL5A3P25940 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A3P25940 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
COL5A3P25940 AL138688.1-201ENST00000624851 1594 ntBASIC21.25■□□□□ 0.99
COL5A3P25940 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A3P25940 AC087499.5-201ENST00000452760 1342 ntBASIC21.25■□□□□ 0.99
COL5A3P25940 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC21.25■□□□□ 0.99
COL5A3P25940 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC21.25■□□□□ 0.99
COL5A3P25940 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A3P25940 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC21.25■□□□□ 0.99
COL5A3P25940 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
COL5A3P25940 PGF-202ENST00000405431 666 ntTSL 5 BASIC21.25■□□□□ 0.99
COL5A3P25940 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC21.25■□□□□ 0.99
COL5A3P25940 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A3P25940 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
COL5A3P25940 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC21.25■□□□□ 0.99
COL5A3P25940 AL512361.1-201ENST00000554200 418 ntBASIC21.25■□□□□ 0.99
COL5A3P25940 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC21.25■□□□□ 0.99
COL5A3P25940 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A3P25940 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
COL5A3P25940 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
COL5A3P25940 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.25■□□□□ 0.99
COL5A3P25940 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A3P25940 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A3P25940 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC21.25■□□□□ 0.99
COL5A3P25940 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A3P25940 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC21.24■□□□□ 0.99
COL5A3P25940 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
COL5A3P25940 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
COL5A3P25940 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
COL5A3P25940 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 RPL37AP1-201ENST00000412502 279 ntBASIC21.24■□□□□ 0.99
COL5A3P25940 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
COL5A3P25940 GIMAP3P-201ENST00000495150 836 ntBASIC21.24■□□□□ 0.99
COL5A3P25940 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 AC108860.2-201ENST00000562760 2183 ntBASIC21.24■□□□□ 0.99
COL5A3P25940 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC21.24■□□□□ 0.99
COL5A3P25940 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
COL5A3P25940 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms