Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.02■□□□□ 0.48
BDNFP23560 RPSAP43-201ENST00000402237 625 ntBASIC18.02■□□□□ 0.48
BDNFP23560 MIR1233-2-201ENST00000408138 82 ntBASIC18.02■□□□□ 0.48
BDNFP23560 MIR1233-1-201ENST00000408722 82 ntBASIC18.02■□□□□ 0.48
BDNFP23560 UPF3AP3-201ENST00000420996 769 ntBASIC18.02■□□□□ 0.48
BDNFP23560 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.02■□□□□ 0.48
BDNFP23560 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.02■□□□□ 0.48
BDNFP23560 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.02■□□□□ 0.48
BDNFP23560 AC112482.1-201ENST00000492080 688 ntBASIC18.02■□□□□ 0.48
BDNFP23560 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.02■□□□□ 0.48
BDNFP23560 KRT19P2-202ENST00000557173 1012 ntBASIC18.02■□□□□ 0.48
BDNFP23560 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.02■□□□□ 0.48
BDNFP23560 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.02■□□□□ 0.48
BDNFP23560 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.02■□□□□ 0.48
BDNFP23560 MTDHP5-201ENST00000598980 586 ntBASIC18.02■□□□□ 0.48
BDNFP23560 ACTL9-202ENST00000612068 1252 ntBASIC18.02■□□□□ 0.48
BDNFP23560 AC025580.3-201ENST00000617932 1424 ntBASIC18.02■□□□□ 0.48
BDNFP23560 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
BDNFP23560 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
BDNFP23560 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
BDNFP23560 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
BDNFP23560 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
BDNFP23560 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
BDNFP23560 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
BDNFP23560 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
BDNFP23560 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.01■□□□□ 0.47
BDNFP23560 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
BDNFP23560 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.01■□□□□ 0.47
BDNFP23560 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.01■□□□□ 0.47
BDNFP23560 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 GPX1P2-201ENST00000429271 606 ntBASIC18.01■□□□□ 0.47
BDNFP23560 DNAJB3-201ENST00000446806 729 ntBASIC18.01■□□□□ 0.47
BDNFP23560 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.01■□□□□ 0.47
BDNFP23560 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 AC107918.2-201ENST00000530817 355 ntBASIC18.01■□□□□ 0.47
BDNFP23560 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.01■□□□□ 0.47
BDNFP23560 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.01■□□□□ 0.47
BDNFP23560 AC023141.13-201ENST00000604991 943 ntBASIC18.01■□□□□ 0.47
BDNFP23560 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.01■□□□□ 0.47
BDNFP23560 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.01■□□□□ 0.47
BDNFP23560 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.01■□□□□ 0.47
BDNFP23560 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
BDNFP23560 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
BDNFP23560 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
BDNFP23560 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.01■□□□□ 0.47
BDNFP23560 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
BDNFP23560 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
BDNFP23560 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
BDNFP23560 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18■□□□□ 0.47
BDNFP23560 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18■□□□□ 0.47
BDNFP23560 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18■□□□□ 0.47
BDNFP23560 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18■□□□□ 0.47
BDNFP23560 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18■□□□□ 0.47
BDNFP23560 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18■□□□□ 0.47
BDNFP23560 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
BDNFP23560 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18■□□□□ 0.47
BDNFP23560 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18■□□□□ 0.47
BDNFP23560 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18■□□□□ 0.47
BDNFP23560 MCCD1P2-201ENST00000423228 335 ntBASIC18■□□□□ 0.47
BDNFP23560 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18■□□□□ 0.47
BDNFP23560 AL513480.1-201ENST00000451731 511 ntBASIC18■□□□□ 0.47
BDNFP23560 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18■□□□□ 0.47
BDNFP23560 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18■□□□□ 0.47
BDNFP23560 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 MIR3687-2-201ENST00000577708 61 ntBASIC18■□□□□ 0.47
BDNFP23560 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18■□□□□ 0.47
BDNFP23560 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18■□□□□ 0.47
BDNFP23560 MIR3687-1-201ENST00000614492 61 ntBASIC18■□□□□ 0.47
BDNFP23560 AC055717.3-201ENST00000622967 595 ntBASIC18■□□□□ 0.47
BDNFP23560 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18■□□□□ 0.47
BDNFP23560 AC007064.4-201ENST00000637740 555 ntBASIC18■□□□□ 0.47
BDNFP23560 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
BDNFP23560 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18■□□□□ 0.47
BDNFP23560 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18■□□□□ 0.47
BDNFP23560 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18■□□□□ 0.47
BDNFP23560 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms