Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.61■□□□□ 0.25
LDLRP01130 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
LDLRP01130 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 Z83836.1-201ENST00000624605 1642 ntBASIC16.61■□□□□ 0.25
LDLRP01130 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 FAM220CP-201ENST00000395253 831 ntBASIC16.61■□□□□ 0.25
LDLRP01130 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.61■□□□□ 0.25
LDLRP01130 RNA5SP419-201ENST00000515908 135 ntBASIC16.61■□□□□ 0.25
LDLRP01130 KRT18P58-201ENST00000527480 1120 ntBASIC16.61■□□□□ 0.25
LDLRP01130 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
LDLRP01130 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.61■□□□□ 0.25
LDLRP01130 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.61■□□□□ 0.25
LDLRP01130 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
LDLRP01130 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.61■□□□□ 0.25
LDLRP01130 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 AC233702.3-201ENST00000578656 1387 ntBASIC16.61■□□□□ 0.25
LDLRP01130 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LDLRP01130 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LDLRP01130 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
LDLRP01130 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.61■□□□□ 0.25
LDLRP01130 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.61■□□□□ 0.25
LDLRP01130 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.6■□□□□ 0.25
LDLRP01130 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.6■□□□□ 0.25
LDLRP01130 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
LDLRP01130 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.6■□□□□ 0.25
LDLRP01130 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LDLRP01130 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.6■□□□□ 0.25
LDLRP01130 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
LDLRP01130 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.6■□□□□ 0.25
LDLRP01130 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LDLRP01130 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.6■□□□□ 0.25
LDLRP01130 MIR3180-4-201ENST00000582223 153 ntBASIC16.6■□□□□ 0.25
LDLRP01130 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 REXO1L6P-202ENST00000619970 1078 ntBASIC16.6■□□□□ 0.25
LDLRP01130 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.6■□□□□ 0.25
LDLRP01130 AC112497.1-201ENST00000624824 639 ntBASIC16.6■□□□□ 0.25
LDLRP01130 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
LDLRP01130 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.6■□□□□ 0.25
LDLRP01130 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.6■□□□□ 0.25
LDLRP01130 AC016396.2-201ENST00000562575 1417 ntBASIC16.6■□□□□ 0.25
LDLRP01130 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDLRP01130 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
LDLRP01130 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
LDLRP01130 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.59■□□□□ 0.25
LDLRP01130 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
LDLRP01130 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
LDLRP01130 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.59■□□□□ 0.25
LDLRP01130 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.59■□□□□ 0.25
LDLRP01130 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.59■□□□□ 0.25
LDLRP01130 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.59■□□□□ 0.25
LDLRP01130 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.59■□□□□ 0.25
LDLRP01130 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.59■□□□□ 0.25
LDLRP01130 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.59■□□□□ 0.25
LDLRP01130 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.59■□□□□ 0.25
LDLRP01130 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.59■□□□□ 0.25
LDLRP01130 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 SLC25A1P1-201ENST00000528351 927 ntBASIC16.59■□□□□ 0.25
LDLRP01130 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.59■□□□□ 0.25
LDLRP01130 Z69720.1-201ENST00000601483 472 ntBASIC16.59■□□□□ 0.25
LDLRP01130 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.59■□□□□ 0.25
LDLRP01130 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms