Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VPS4AQ9UN37 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4AQ9UN37 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS4AQ9UN37 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4AQ9UN37 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS4AQ9UN37 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
VPS4AQ9UN37 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS4AQ9UN37 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4AQ9UN37 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS4AQ9UN37 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4AQ9UN37 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4AQ9UN37 LYSMD4-203ENST00000378904 2122 ntBASIC16.66■□□□□ 0.26
VPS4AQ9UN37 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4AQ9UN37 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.65■□□□□ 0.26
VPS4AQ9UN37 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
VPS4AQ9UN37 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 AC124067.4-201ENST00000519691 2379 ntBASIC16.64■□□□□ 0.25
VPS4AQ9UN37 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 UBALD1-205ENST00000590891 2641 ntBASIC16.64■□□□□ 0.25
VPS4AQ9UN37 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 RPS2P28-201ENST00000314255 741 ntBASIC16.64■□□□□ 0.25
VPS4AQ9UN37 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 AC073648.2-201ENST00000510116 352 ntBASIC16.64■□□□□ 0.25
VPS4AQ9UN37 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 AC139887.3-201ENST00000568585 713 ntBASIC16.64■□□□□ 0.25
VPS4AQ9UN37 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4AQ9UN37 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms