Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 PRELID1P1-202ENST00000567272 903 ntBASIC18.38■□□□□ 0.53
SIX2Q9NPC8 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 AL589182.2-201ENST00000619332 1049 ntBASIC18.38■□□□□ 0.53
SIX2Q9NPC8 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 HLA-A-202ENST00000376806 1854 ntBASIC18.37■□□□□ 0.53
SIX2Q9NPC8 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 CLEC4GP1-201ENST00000596555 870 ntBASIC18.37■□□□□ 0.53
SIX2Q9NPC8 MTDHP4-201ENST00000600287 670 ntBASIC18.37■□□□□ 0.53
SIX2Q9NPC8 AC025062.2-201ENST00000605477 670 ntBASIC18.37■□□□□ 0.53
SIX2Q9NPC8 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SIX2Q9NPC8 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.36■□□□□ 0.53
SIX2Q9NPC8 TNRC18P3-201ENST00000441896 2691 ntBASIC18.36■□□□□ 0.53
SIX2Q9NPC8 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 UNC93B7-201ENST00000509439 705 ntBASIC18.35■□□□□ 0.53
SIX2Q9NPC8 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 AC004706.3-202ENST00000621574 984 ntBASIC18.35■□□□□ 0.53
SIX2Q9NPC8 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SIX2Q9NPC8 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms