Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
UBQLN3Q9H347 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
UBQLN3Q9H347 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 AC106886.4-201ENST00000623557 2502 ntBASIC15.92■□□□□ 0.14
UBQLN3Q9H347 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 AC003669.1-201ENST00000334569 611 ntBASIC15.92■□□□□ 0.14
UBQLN3Q9H347 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 STK25P1-201ENST00000585406 838 ntBASIC15.92■□□□□ 0.14
UBQLN3Q9H347 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 MTDHP4-201ENST00000600287 670 ntBASIC15.92■□□□□ 0.14
UBQLN3Q9H347 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 MIR7706-201ENST00000613747 67 ntBASIC15.92■□□□□ 0.14
UBQLN3Q9H347 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 AL022326.1-202ENST00000641533 845 ntBASIC15.92■□□□□ 0.14
UBQLN3Q9H347 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
UBQLN3Q9H347 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 AL020989.1-201ENST00000422979 469 ntBASIC15.91■□□□□ 0.14
UBQLN3Q9H347 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 RPS2P1-201ENST00000434010 821 ntBASIC15.91■□□□□ 0.14
UBQLN3Q9H347 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 BX005266.1-201ENST00000473402 457 ntBASIC15.91■□□□□ 0.14
UBQLN3Q9H347 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.91■□□□□ 0.14
UBQLN3Q9H347 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 AC116353.5-201ENST00000638148 1699 ntBASIC15.9■□□□□ 0.14
UBQLN3Q9H347 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 RPS2P28-201ENST00000314255 741 ntBASIC15.9■□□□□ 0.14
UBQLN3Q9H347 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 KLF4P1-201ENST00000412782 1185 ntBASIC15.9■□□□□ 0.14
UBQLN3Q9H347 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
UBQLN3Q9H347 AC079776.4-201ENST00000511039 504 ntBASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms