Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 HCG4-201ENST00000418983 998 ntBASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 ACTL9-202ENST00000612068 1252 ntBASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 AL353732.1-201ENST00000569618 1459 ntBASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC21.81■■□□□ 1.08
CHMP4AQ9BY43 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 BCAR1-209ENST00000546196 1340 ntBASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 AL023806.1-201ENST00000603994 1649 ntBASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 FOS-208ENST00000555686 1496 ntTSL 2 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 YBX2P1-201ENST00000394192 760 ntBASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 AL513480.1-201ENST00000451731 511 ntBASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 AC107918.2-201ENST00000530817 355 ntBASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 KRT19P2-202ENST00000557173 1012 ntBASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 FRMD8P1-201ENST00000440433 1524 ntBASIC21.8■■□□□ 1.08
CHMP4AQ9BY43 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 CYP51A1P2-201ENST00000419457 1499 ntBASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 UPF3AP3-201ENST00000420996 769 ntBASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 MKNK2P1-201ENST00000437526 628 ntBASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 AC074386.1-202ENST00000463561 864 ntBASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 AC092865.5-201ENST00000545435 363 ntBASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 AL031432.2-201ENST00000566714 459 ntBASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 AL928711.1-201ENST00000570165 459 ntBASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 MIR4515-201ENST00000584082 81 ntBASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 MED16-214ENST00000617672 554 ntTSL 5 BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 HOTTIP_1.1-201ENST00000620415 57 ntBASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 AP001350.2-201ENST00000625104 1094 ntBASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 AC018470.1-201ENST00000624790 3129 ntBASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4AQ9BY43 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 AC067852.2-201ENST00000590513 2313 ntBASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 ACTG1P14-201ENST00000446382 1122 ntBASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4AQ9BY43 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms